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[181061_at]

Description F20E11.3 /REP_DB=WormBase Gene ID /WP=CE18612 /TR=Q9XV84 /GB=CAB04141.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 21      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 5.8
(0.6)
A 		8.7
(3)
A 		1.5
(-3)
A 		6.7
(1.3)
A 		7
B 6.3
(0.8)
A 		9.2
(3)
A 		1.4
(-3)
A 		2.1
(-2.5)
A 		8
C 31.8
(0.2)
A 		14.1
(-1.7)
A 		1.6
(-3)
A 		58.1
(3)
A 		57
avr 14.6
(0.8) 		10.7
(-0.3) 		1.5
(-3) 		22.3
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 38.8
(3)
A 		1.3
(-3)
A 		8.4
(-1.9)
A 		3.5
(-2.6)
A 		3.2
(-2.7)
A 		3.7
(-2.6)
A 		38
B 10.9
(3)
A 		7.9
(1.1)
A 		4.9
(-0.7)
A 		1.2
(-3)
A 		3.3
(-1.7)
A 		6.4
(0.2)
A 		10
C 3.5
(-2.3)
A 		16.1
(3)
A 		7.5
(-0.6)
A 		4.2
(-2)
A 		2.6
(-2.6)
A 		1.7
(-3)
A 		14
avr 17.7
(3) 		8.4
(-0.8) 		6.9
(-1.4) 		3
(-3) 		3
(-3) 		3.9
(-2.6) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.1
(3)
A 		1.9
(2.3)
A 		0.4
(-3)
A 		1
(-0.9)
A 		2
B 2
(2.1)
A 		2.3
(3)
A 		0.3
(-3)
A 		0.4
(-2.7)
A 		2
C 10.5
(3)
A 		4.1
(-0.9)
A 		0.6
(-3)
A 		9.8
(2.6)
A 		10
avr 4.9
(3) 		2.8
(0.2) 		0.4
(-3) 		3.7
(1.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 7.2
(3)
A 		0.5
(-3)
A 		1.8
(-1.8)
A 		0.9
(-2.6)
A 		1
(-2.6)
A 		0.9
(-2.6)
A 		7
B 3.8
(3)
A 		2.6
(0.9)
A 		1.2
(-1.5)
A 		0.3
(-3)
A 		1.3
(-1.3)
A 		2.4
(0.6)
A 		4
C 1.3
(-2)
A 		4.9
(3)
A 		1.9
(-1.2)
A 		0.8
(-2.7)
A 		0.8
(-2.7)
A 		0.6
(-3)
A 		4
avr 4.1
(3) 		2.7
(0.5) 		1.6
(-1.4) 		0.7
(-3) 		1
(-2.5) 		1.3
(-1.9) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181061_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13090
Sequence Type Exemplar sequence
Representative Public ID F20E11.3 NCBI
Target Description F20E11.3 /REP_DB=WormBase Gene ID /WP=CE18612 /TR=Q9XV84 /GB=CAB04141.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000027639 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17449449:17454128:1 9/11 None
F20E11.3 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17448925:17450213:1 gene:F20E11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17448924-17450213(+) 100.0 100.0
Public Domain and Genome References
Ensembl F20E11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T21159 hypothetical protein F20E11.8 - Caenorhabditis elegans 1.0E-139
blast CAB63200 Hypothetical protein F40D4.3 [Caenorhabditis elegans] ref|NP_507350.1| Serpentine Receptor, class H family member (srh-159) [Caenorhabditis elegans] 1.0E-112
blast T21155 hypothetical protein F20E11.3 - Caenorhabditis elegans 7.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.5E-78
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.3E-78
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.5E-70
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-96
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000027639 15 7-29,70-92,113-135,150-172,185-202,212-231,244-266,286-308,349-371,391-413,426-448,488-510,523-545,565-587,607-629
Sequence
Target Sequence 
>C. ELEGANS:181061_AT
tcggttattatttgttgcgttgcattatgtttctgctgtaatgtaccatgcgccggtatt
ctttttccttcccgatcaagaagatggaagacttgaattaaaaagtaaaaatcagtgtat
tccaatagaagttttcgatcatccaaacttttttttactcgagcacaatgggactcatat
tgtcacttgcatattattcttgatgactattcttttgcctcaaatgtttttgcacttcgg
gctgatttttcgtcatttgctcaaaagtacacctgtttctagaagcacaattcgtttaca
acaacagttttttatcgcaatgagcatgcaagttatcattccgtttgtcataattgcttt
tccagcgttttatatgtttttttcagttttatctgattattgtaatcaagacgcaaacaa
catagtatttacggtaatttccatacatggagtgttatccacttggacaatgatgatggc
atacagaccttatagagaatcaattgtccaaatgttgaatctgaatttcaatcagtcagg
tcgtggtgctcaacttatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGTTATTATTTGTTGCGTTGCAT 188 605 441 Antisense
TGCGTTGCATTATGTTTCTGCTGTA 442 583 456 Antisense
TTCTGCTGTAATGTACCATGCGCCG 550 689 471 Antisense
AACTTTTTTTTACTCGAGCACAATG 510 139 586 Antisense
GGGACTCATATTGTCACTTGCATAT 304 495 610 Antisense
TTCTTGATGACTATTCTTTTGCCTC 665 689 637 Antisense
CAAATGTTTTTGCACTTCGGGCTGA 274 193 661 Antisense
CACTTCGGGCTGATTTTTCGTCATT 602 195 673 Antisense
ATCATTCCGTTTGTCATAATTGCTT 19 31 775 Antisense
GAATTTCAATCAGTCAGGTCGTGGT 496 325 963 Antisense
CAGGTCGTGGTGCTCAACTTATTTG 490 205 977 Antisense
Sequence Source Affymetrix Proprietary Database