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[181060_s_at]

Description F01F1.9 /REP_DB=WormBase Gene ID /WP=CE01235 /TR=Q19087 /GB=AAC46643.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 21      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 24      6grp_total > 33      4grp_total > 49      6grp_highest_sub > 01_02_03      6grp_high1_sub > 03      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5060
1 2 3 4 range
A 3210.3
(-3)
P 		8060.6
(3)
P 		6900.7
(1.6)
P 		3681
(-2.4)
P 		4850
B 3280.6
(-2.9)
P 		6413.2
(2.4)
P 		6778.5
(3)
P 		3239.4
(-3)
P 		3539
C 3034.3
(-2.9)
P 		6437.4
(3)
P 		6323.4
(2.8)
P 		3000.9
(-3)
P 		3437
avr 3175.1
(-3) 		6970.4
(3) 		6667.5
(2.5) 		3307.1
(-2.8) 		3795

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1822
1 2 3 4 5 6 range
A 3659.5
(2.5)
P 		3784.9
(3)
P 		2926.8
(-0.6)
P 		2744.2
(-1.3)
P 		2340.7
(-3)
P 		2361.9
(-2.9)
P 		1444
B 3171.9
(0.7)
P 		3210.7
(0.8)
P 		3750.7
(3)
P 		2738.9
(-1.1)
P 		2324
(-2.8)
P 		2266.3
(-3)
P 		1484
C 2844.4
(-0.5)
P 		3264.2
(0.9)
P 		3913.5
(3)
P 		3033.3
(0.1)
P 		2091.6
(-3)
P 		2301.6
(-2.3)
P 		1822
avr 3225.3
(1.6) 		3419.9
(2.5) 		3530.3
(3) 		2838.8
(-0.2) 		2252.1
(-3) 		2309.9
(-2.7) 		1278
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1698
1 2 3 4 range
A 1168.9
(-0)
P 		1749.7
(2.7)
P 		1804
(3)
P 		538.8
(-3)
P 		1265
B 1046.2
(-0.6)
P 		1583.9
(3)
P 		1570.7
(2.9)
P 		690.3
(-3)
P 		894
C 1004.4
(-1.2)
P 		1850.8
(1.8)
P 		2203.9
(3)
P 		506
(-3)
P 		1698
avr 1073.2
(-0.7) 		1728.1
(2.4) 		1859.5
(3) 		578.4
(-3) 		1281

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 771
1 2 3 4 5 6 range
A 674.6
(-2.2)
P 		1346.1
(3)
P 		637.4
(-2.5)
P 		696
(-2.1)
P 		706.3
(-2)
P 		575.1
(-3)
P 		771
B 1103.7
(3)
P 		1068.7
(2.4)
P 		910.8
(-0.1)
P 		725.4
(-3)
P 		944.2
(0.5)
P 		845.1
(-1.1)
P 		378
C 1054.3
(3)
P 		996
(2.2)
P 		996.1
(2.2)
P 		610
(-3)
P 		676.8
(-2.1)
P 		770.5
(-0.8)
P 		444
avr 944.2
(0.5) 		1136.9
(3) 		848.1
(-0.8) 		677.1
(-3) 		775.8
(-1.7) 		730.2
(-2.3) 		460
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181060_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7793
Sequence Type Exemplar sequence
Representative Public ID F01F1.9 NCBI
Target Description F01F1.9 /REP_DB=WormBase Gene ID /WP=CE01235 /TR=Q19087 /GB=AAC46643.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065864(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065864 NCBI Caenorhabditis elegans F01F1.9 (F01F1.9) mRNA, complete cds. 11/11 None
SNAP00000009921 ENSEMBL cdna:SNAP chromosome:CEL140:III:5861941:5863496:-1 11/11 None
GENEFINDER00000009941 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5861941:5863496:-1 11/11 None
F01F1.9 ENSEMBL cdna:known chromosome:CEL140:III:5861812:5863496:-1 gene:F01F1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5861939-5863495(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F01F1.9
Entrez Gene 175822 Entrez gene
SwissProt Q19087 EMBL-EBI
WormBase CE01235 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247624_AT aspartyl aminopeptidase, putative at
CANINE:1604553_AT similar to Aspartyl aminopeptidase cfa
CANINE:1587231_X_AT similar to Aspartyl aminopeptidase cfa
CANINE_2:CFA.1331.1.A1_S_AT similar to Aspartyl aminopeptidase cfa
CANINE_2:CFA.6893.1.S1_S_AT similar to Aspartyl aminopeptidase cfa
CANINE_2:CFAAFFX.23735.1.S1_AT similar to Aspartyl aminopeptidase cfa
CANINE_2:CFAAFFX.23735.1.S1_X_AT similar to Aspartyl aminopeptidase cfa
CHICKEN:GGA.8509.1.S1_S_AT aspartyl aminopeptidase gga
HU35KSUBA:RC_AA600292_AT aspartyl aminopeptidase hs
HU35KSUBA:AA459166_S_AT aspartyl aminopeptidase hs
HG-U133A:201937_S_AT aspartyl aminopeptidase hs
HG-U133_PLUS_2:201937_S_AT aspartyl aminopeptidase hs
HG-U133A_2:201937_S_AT aspartyl aminopeptidase hs
U133_X3P:G6912247_3P_S_AT aspartyl aminopeptidase hs
U133_X3P:G6912247_3P_A_AT aspartyl aminopeptidase hs
U133_X3P:HS.258551.2.S1_3P_X_AT aspartyl aminopeptidase hs
U133_X3P:HS.258551.2.S1_3P_AT aspartyl aminopeptidase hs
U133_X3P:4878970_3P_AT aspartyl aminopeptidase hs
U133_X3P:215135_3P_AT aspartyl aminopeptidase hs
U133_X3P:201937_3P_S_AT aspartyl aminopeptidase hs
HG-U133A_2:215135_AT aspartyl aminopeptidase hs
HG-U133_PLUS_2:215135_AT aspartyl aminopeptidase hs
HG-U133A:215135_AT aspartyl aminopeptidase hs
HG-U133A_2:38703_AT aspartyl aminopeptidase hs
HG-FOCUS:38703_AT aspartyl aminopeptidase hs
HG-U133_PLUS_2:38703_AT aspartyl aminopeptidase hs
HG-U133A:38703_AT aspartyl aminopeptidase hs
HG-U95AV2:38703_AT aspartyl aminopeptidase hs
HG-U95D:69080_AT aspartyl aminopeptidase hs
HG-U95E:71252_R_AT aspartyl aminopeptidase hs
HU35KSUBD:RC_C20945_AT Aspartyl aminopeptidase hs
MOUSE430_2:1437437_X_AT aspartyl aminopeptidase mm
MOE430A:1437437_X_AT aspartyl aminopeptidase mm
MOUSE430A_2:1437437_X_AT aspartyl aminopeptidase mm
MOUSE430A_2:1460579_AT aspartyl aminopeptidase mm
MOE430A:1460579_AT aspartyl aminopeptidase mm
MOUSE430_2:1460579_AT aspartyl aminopeptidase mm
MOUSE430A_2:1439452_X_AT aspartyl aminopeptidase mm
MOUSE430_2:1439452_X_AT aspartyl aminopeptidase mm
MOE430A:1439452_X_AT aspartyl aminopeptidase mm
MU11KSUBA:AA259803_S_AT aspartyl aminopeptidase mm
MU11KSUBA:AA512103_S_AT aspartyl aminopeptidase mm
MG-U74AV2:95455_AT aspartyl aminopeptidase mm
MG-U74CV2:170295_AT aspartyl aminopeptidase mm
MOE430A:1438557_X_AT aspartyl aminopeptidase mm
MOUSE430A_2:1438557_X_AT aspartyl aminopeptidase mm
MOUSE430_2:1438557_X_AT aspartyl aminopeptidase mm
MOE430A:1416127_A_AT aspartyl aminopeptidase mm
MOUSE430A_2:1416127_A_AT aspartyl aminopeptidase mm
MOUSE430_2:1416127_A_AT aspartyl aminopeptidase mm
MG-U74AV2:161143_R_AT Aspartyl aminopeptidase (Dnpep), mRNA mm
MU11KSUBA:AA512103_I_AT Aspartyl aminopeptidase (Dnpep), mRNA mm
MU19KSUBB:TC30538_S_AT Aspartyl aminopeptidase (Dnpep), mRNA mm
RG-U34A:RC_AA893353_AT aspartyl aminopeptidase rn
RAE230A:1398954_AT aspartyl aminopeptidase rn
RAT230_2:1398954_AT aspartyl aminopeptidase rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5773 vacuole inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4250 aminopeptidase I activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC46643 Hypothetical protein F01F1.9 [Caenorhabditis elegans] ref|NP_498265.1| F01F1.9 [Caenorhabditis elegans] sp|Q19087|DNPEP_CAEEL Putative aspartyl aminopeptidase 0.0
blast CAE64381 Hypothetical protein CBG09068 [Caenorhabditis briggsae] 0.0
blast AAH85080 LOC495491 protein [Xenopus laevis] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR001948 EMBL-EBI Peptidase M18, aminopeptidase I 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:181060_S_AT
gtggacttctcgagtctctaactggagagtcattcaagaatgacccacaaattcgtattg
ccgcatgcttcgataacgaggaagtaggatcggattccgcgatgggagcatcttcttctt
tcacggagttcgttctccgccgtctttctgctggaggctcaacaaccgctttcgaagaag
caatcggaaagagcatgctcatctctgcagatcaagctcatgccacgcatccaaactatt
cggcaaaacacgaagagaaccatcgtccagcattccatggtggagtcgtcgtcaaagtaa
acgtcaatcaacgatatgcaacaacttcaaccacacacgctgctctcaagcaagttgcat
tcgaagctcaagttcctcttcaagttgtcgtcgttcgcaatgattctccttgtggatcga
cggttggaccgattcttgccacaaaacttggcttgcagactgtcgatgtaggatgcccac
agttggctatgcactcgattcgcgagtttgccgacacttcgagcatctaccaggccacca
ctctctactctacattctacgaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGACTTCTCGAGTCTCTAACTGG 132 491 830 Antisense
AATTCGTATTGCCGCATGCTTCGAT 592 177 879 Antisense
AGGCTCAACAACCGCTTTCGAAGAA 73 53 984 Antisense
AAGAGCATGCTCATCTCTGCAGATC 562 153 1018 Antisense
TGCAGATCAAGCTCATGCCACGCAT 119 579 1035 Antisense
CACACACGCTGCTCTCAAGCAAGTT 420 195 1161 Antisense
CAAGTTCCTCTTCAAGTTGTCGTCG 154 185 1198 Antisense
GTTGTCGTCGTTCGCAATGATTCTC 527 437 1213 Antisense
GTTGGACCGATTCTTGCCACAAAAC 251 435 1252 Antisense
GATGCCCACAGTTGGCTATGCACTC 236 415 1301 Antisense
CTCTCTACTCTACATTCTACGAACG 341 229 1370 Antisense
Sequence Source Affymetrix Proprietary Database