[Home] | [Total List]

[181059_at]

Description F54G2.2 /REP_DB=WormBase Gene ID /WP=CE19461 /TR=O76571 /GB=AAC64626.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 66.6
(-2.5)
A 		84
(-1.6)
A 		56.2
(-3)
A 		172.6
(3)
A 		116
B 76.2
(2.5)
M 		27.4
(-3)
A 		58.9
(0.5)
A 		80.8
(3)
A 		53
C 81.6
(2.7)
A 		83.2
(3)
A 		47.9
(-3)
A 		63.4
(-0.4)
A 		35
avr 74.8
(-0.6) 		64.9
(-1.8) 		54.3
(-3) 		105.6
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 51.3
(0.1)
A 		26.2
(-3)
A 		75.4
(3)
A 		45
(-0.7)
A 		58.3
(0.9)
A 		29
(-2.7)
A 		49
B 77.9
(3)
M 		55.1
(0.3)
A 		42.7
(-1.2)
A 		34.9
(-2.2)
A 		28.1
(-3)
A 		53.7
(0.1)
A 		50
C 46.5
(-1.8)
M 		65.6
(3)
A 		51.6
(-0.5)
A 		45
(-2.2)
A 		54.4
(0.2)
P 		41.8
(-3)
A 		24
avr 58.6
(3) 		49
(-0.4) 		56.6
(2.3) 		41.6
(-3) 		46.9
(-1.1) 		41.5
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 24.3
(2.4)
A 		18.2
(-1)
A 		14.7
(-3)
A 		25.3
(3)
A 		11
B 24.3
(3)
M 		6.8
(-3)
A 		13.6
(-0.7)
A 		17.2
(0.6)
A 		18
C 27
(3)
A 		23.9
(1.9)
A 		16.7
(-0.8)
A 		10.7
(-3)
A 		16
avr 25.2
(3) 		16.3
(-2.2) 		15
(-3) 		17.7
(-1.4) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 9.5
(-1.6)
A 		9.3
(-1.7)
A 		16.4
(2.3)
A 		11.4
(-0.5)
A 		17.6
(3)
A 		7.1
(-3)
A 		11
B 27.1
(3)
M 		18.3
(0.1)
A 		10.4
(-2.6)
A 		9.2
(-3)
A 		11.4
(-2.3)
A 		20
(0.6)
A 		18
C 17.2
(1.5)
M 		20
(3)
A 		13.1
(-0.8)
A 		9
(-3)
A 		17.6
(1.7)
P 		14
(-0.3)
A 		11
avr 17.9
(3) 		15.9
(1.5) 		13.3
(-0.4) 		9.9
(-3) 		15.5
(1.2) 		13.7
(-0.2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181059_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18231
Sequence Type Exemplar sequence
Representative Public ID F54G2.2 NCBI
Target Description F54G2.2 /REP_DB=WormBase Gene ID /WP=CE19461 /TR=O76571 /GB=AAC64626.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076071(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076071 NCBI Caenorhabditis elegans F54G2.2 (F54G2.2) mRNA, complete cds. 11/11 None
SNAP00000037519 ENSEMBL cdna:SNAP chromosome:CEL140:X:2634657:2636783:-1 11/11 None
F54G2.2 ENSEMBL cdna:known chromosome:CEL140:X:2634657:2637793:-1 gene:F54G2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2634656-2637793(-) 80.31 100.0
Public Domain and Genome References
Gene Title
Ensembl F54G2.2
Entrez Gene 186260 Entrez gene
SwissProt O76571 EMBL-EBI
WormBase CE19461 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC64626 Hypothetical protein F54G2.2 [Caenorhabditis elegans] ref|NP_508472.1| F54G2.2 [Caenorhabditis elegans] 0.0
blast AAA50456 gag, pol and env protein precursor [Caenorhabditis elegans] 2.0E-86
blast AAL02516 Hypothetical protein F44E2.2b [Caenorhabditis elegans] ref|NP_498958.1| F44E2.2b [Caenorhabditis elegans] sp|P34431|YL52_CAEEL Hypothetical protein F44E2.2 in chromosome III 1.0E-75
blast AAA50456 gag, pol and env protein precursor [Caenorhabditis elegans] 4.0E-72
blast AAL02516 Hypothetical protein F44E2.2b [Caenorhabditis elegans] ref|NP_498958.1| F44E2.2b [Caenorhabditis elegans] sp|P34431|YL52_CAEEL Hypothetical protein F44E2.2 in chromosome III 4.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 1.9E-6
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 1.9E-6
Sequence
Target Sequence 
>C. ELEGANS:181059_AT
tgttctgcagagcccggacttaaaaagaagggagatggtgcctgtggcatctatgaagtt
catgatcctggtgaaagagaccacagtttaacagcgcagaaaaatggaatttgtttttca
aattctaatgacagtttttccagagacaacaatagatgcactttggacaaacacatgtac
aaacactcgtcagatccgccaactgaggatactcctgttgtggaagtgattgaaatttct
aacaagccagtaagaagaaacatgtttgatcaatggcaactcatttatgaagaccaagta
agagcacaacagagatatgagcaaaatgcagagaaacgtgcaaagattgtagaagctggt
agactaaagaagaaaaaaagagacatgataagaagagaacgagcagctcgagccattctc
aaagccaatgagactgtcgcttctgatcatacaaaacaaatggaaaaggatcagcagccg
agttgtcatacagacaacagaagcaggatgatggtctttccatctcgtcaagcagttgaa
gttgctcaggattgttcggtgtcaccgaccaggattttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCTGCAGAGCCCGGACTTAAAA 147 561 2461 Antisense
GTGCCTGTGGCATCTATGAAGTTCA 239 479 2498 Antisense
GAGACCACAGTTTAACAGCGCAGAA 41 395 2537 Antisense
TGTACAAACACTCGTCAGATCCGCC 582 559 2636 Antisense
GATCCGCCAACTGAGGATACTCCTG 344 417 2653 Antisense
AGCTCGAGCCATTCTCAAAGCCAAT 690 79 2865 Antisense
TGAGACTGTCGCTTCTGATCATACA 363 569 2889 Antisense
TCAGCAGCCGAGTTGTCATACAGAC 495 623 2931 Antisense
TCTTTCCATCTCGTCAAGCAGTTGA 646 615 2975 Antisense
GTTGCTCAGGATTGTTCGGTGTCAC 575 439 3001 Antisense
CGGTGTCACCGACCAGGATTTTGGA 497 243 3017 Antisense
Sequence Source Affymetrix Proprietary Database