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[181058_at]

Description Y9C9A.1 /REP_DB=WormBase Gene ID /WP=CE21354 /TR=Q9N2S5 /GB=AAF60927.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 47      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 167.4
(3)
P 		58.9
(-2.3)
A 		43.9
(-3)
A 		45.2
(-2.9)
A 		124
B 176.1
(3)
P 		68.1
(-2.1)
A 		79.2
(-1.6)
A 		48.4
(-3)
A 		128
C 166
(3)
P 		51.7
(-3)
A 		51.5
(-3)
A 		101.9
(-0.4)
P 		115
avr 169.8
(3) 		59.6
(-2.9) 		58.2
(-3) 		65.2
(-2.6) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 205.9
(3)
P 		121.8
(0.1)
P 		94.2
(-0.9)
M 		103.1
(-0.6)
P 		78.5
(-1.4)
P 		32.3
(-3)
A 		174
B 209.1
(3)
P 		180.3
(1.8)
P 		126.2
(-0.3)
P 		102.4
(-1.3)
P 		99.3
(-1.4)
P 		59.6
(-3)
A 		150
C 193.2
(3)
P 		124.7
(0.3)
M 		124.6
(0.3)
P 		86
(-1.2)
P 		93
(-1)
P 		41.7
(-3)
A 		152
avr 202.7
(3) 		142.3
(0.7) 		115
(-0.3) 		97.2
(-1) 		90.3
(-1.3) 		44.5
(-3) 		158
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 60.9
(3)
P 		12.8
(-2.3)
A 		11.5
(-2.5)
A 		6.6
(-3)
A 		54
B 56.2
(3)
P 		16.8
(-2.2)
A 		18.3
(-2)
A 		10.3
(-3)
A 		46
C 54.9
(3)
P 		14.9
(-3)
A 		18
(-2.5)
A 		17.2
(-2.7)
P 		40
avr 57.3
(3) 		14.8
(-2.6) 		15.9
(-2.4) 		11.4
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 38
(2.1)
P 		43.3
(3)
P 		20.5
(-0.9)
M 		26.1
(0.1)
P 		23.7
(-0.3)
P 		7.9
(-3)
A 		35
B 72.8
(3)
P 		60
(1.5)
P 		30.6
(-2)
P 		27.1
(-2.4)
P 		40.4
(-0.8)
P 		22.2
(-3)
A 		51
C 71.6
(3)
P 		38
(-0.5)
M 		31.7
(-1.1)
P 		17.3
(-2.6)
P 		30.1
(-1.3)
P 		13.9
(-3)
A 		58
avr 60.8
(3) 		47.1
(1.2) 		27.6
(-1.3) 		23.5
(-1.9) 		31.4
(-0.8) 		14.7
(-3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181058_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10516
Sequence Type Exemplar sequence
Representative Public ID Y9C9A.1 NCBI
Target Description Y9C9A.1 /REP_DB=WormBase Gene ID /WP=CE21354 /TR=Q9N2S5 /GB=AAF60927.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068283(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068283 NCBI Caenorhabditis elegans Y9C9A.1 (Y9C9A.1) mRNA, complete cds. 11/11 None
SNAP00000021399 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4963994:4965359:1 11/11 None
GENEFINDER00000021414 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4963994:4965359:1 11/11 None
Y9C9A.1 ENSEMBL cdna:known chromosome:CEL140:IV:4963919:4965359:1 gene:Y9C9A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4963924-4965365(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y9C9A.1
Entrez Gene 189407 Entrez gene
SwissProt Q9N2S5 EMBL-EBI
WormBase CE21354 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.24314.1.S1_AT similar to Protein UNQ6350/PRO21055 homolog precursor cfa
CHICKEN:GGA.307.1.S1_AT vitelline membrane outer layer protein I gga
U133_X3P:HS.122561.1.A1_3P_X_AT secretory protein LOC284013 hs
U133_X3P:HS.122561.1.A1_3P_AT secretory protein LOC284013 hs
U133_X3P:HS.122561.0.A1_3P_A_AT secretory protein LOC284013 hs
HG-U133_PLUS_2:235751_S_AT secretory protein LOC284013 hs
HG-U133B:235751_S_AT secretory protein LOC284013 hs
HG-U133_PLUS_2:241894_AT secretory protein LOC284013 hs
HG-U133B:241894_AT secretory protein LOC284013 hs
HG-U95E:88741_AT secretory protein LOC284013 hs
Protein Similarities
Method ID Description E-Value
blast NP_500684 Y9C9A.1 [Caenorhabditis elegans] gb|AAF60927.1| Hypothetical protein Y9C9A.1 [Caenorhabditis elegans] 0.0
blast NP_500684 Y9C9A.1 [Caenorhabditis elegans] gb|AAF60927.1| Hypothetical protein Y9C9A.1 [Caenorhabditis elegans] 1.0E-180
blast AAD14740 Hypothetical protein Y40B10B.1 [Caenorhabditis elegans] ref|NP_503538.1| Y40B10B.1 [Caenorhabditis elegans] 1.0E-116
blast AAD14740 Hypothetical protein Y40B10B.1 [Caenorhabditis elegans] ref|NP_503538.1| Y40B10B.1 [Caenorhabditis elegans] 1.0E-111
blast CAE68539 Hypothetical protein CBG14366 [Caenorhabditis briggsae] 2.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 5.7E-116
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 5.7E-116
Sequence
Target Sequence 
>C. ELEGANS:181058_AT
tttgccgggtactgtggaacaccacatggccccaggaaccgagactcgagaattcaagga
gacggtactggatggggagattggacggatgatcagtggtgcccagaaggttacgcagtc
tgtggaatacaaagtcaaattgaaaaagaacaagggcgaggtgatgatacagctgttaac
aatgtggatttggaatgttgtcaagttggagtatcaagttgtaatcctggttactcgctt
gtacgtattggagaatatgacaatagaagaggcgctggaacagtgaccaaggagttccaa
caaagagtttctatcactaaaactagtggagtgacgactacgctttccaattctgagaaa
tattcagtttctaaagctattgaggctggaatttccgccacacatgggatgttcactgcc
aaggttaatactgcacttaccaagacctcggaacgaattacaactagccaacttcaaaga
atgattcaggatgctaccactcatgaaagaattgagaaaattacatttactgttccggct
tggcaccgtgttattgtcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGCCGGGTACTGTGGAACACCAC 285 561 472 Antisense
TGGACGGATGATCAGTGGTGCCCAG 95 547 553 Antisense
GTAATCCTGGTTACTCGCTTGTACG 566 461 692 Antisense
GTGGAGTGACGACTACGCTTTCCAA 94 491 797 Antisense
TTGAGGCTGGAATTTCCGCCACACA 662 705 851 Antisense
GCCACACATGGGATGTTCACTGCCA 351 279 868 Antisense
TGCACTTACCAAGACCTCGGAACGA 458 315 903 Antisense
GGAACGAATTACAACTAGCCAACTT 364 529 921 Antisense
TGATTCAGGATGCTACCACTCATGA 501 563 953 Antisense
ATTACATTTACTGTTCCGGCTTGGC 493 1 991 Antisense
CCGGCTTGGCACCGTGTTATTGTCG 691 263 1006 Antisense
Sequence Source Affymetrix Proprietary Database