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[181057_at]

Description T14F9.2 /REP_DB=WormBase Gene ID /WP=CE07498 /TR=Q22493 /GB=AAA91265.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 60      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 90      6grp_total > 70      4grp_total > 47      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 215.1
(3)
P 		121.2
(-3)
P 		150.7
(-1.1)
P 		137.3
(-2)
P 		94
B 205.6
(3)
P 		118
(-3)
P 		161.9
(0)
P 		139.4
(-1.5)
P 		88
C 249.1
(3)
P 		136.1
(-2.2)
P 		119.6
(-3)
P 		141.1
(-2)
P 		130
avr 223.3
(3) 		125.1
(-3) 		144.1
(-1.8) 		139.3
(-2.1) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 160
(-0.6)
P 		176.8
(0.5)
P 		202
(2.1)
P 		216
(3)
P 		122.5
(-3)
P 		162.2
(-0.5)
P 		94
B 180.7
(-1.1)
P 		189.3
(-0.5)
P 		172.7
(-1.6)
P 		237.7
(3)
P 		163.8
(-2.3)
P 		153.6
(-3)
P 		84
C 148.4
(-3)
P 		218.8
(2.6)
P 		190.9
(0.4)
P 		223.8
(3)
P 		165
(-1.7)
P 		178.8
(-0.6)
P 		75
avr 163
(-2) 		195
(0.5) 		188.5
(0) 		225.8
(3) 		150.4
(-3) 		164.9
(-1.8) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 78.3
(3)
P 		26.3
(-2.4)
P 		39.4
(-1)
P 		20.1
(-3)
P 		58
B 65.6
(3)
P 		29.1
(-3)
P 		37.5
(-1.6)
P 		29.7
(-2.9)
P 		37
C 82.5
(3)
P 		39.1
(-1.4)
P 		41.7
(-1.2)
P 		23.8
(-3)
P 		59
avr 75.5
(3) 		31.5
(-2.2) 		39.5
(-1.2) 		24.5
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 29.5
(-3)
P 		62.9
(3)
P 		44
(-0.4)
P 		54.8
(1.5)
P 		37
(-1.7)
P 		39.5
(-1.2)
P 		33
B 62.9
(2.1)
P 		63
(2.1)
P 		41.9
(-3)
P 		63
(2.1)
P 		66.6
(3)
P 		57.3
(0.7)
P 		25
C 55
(-0.2)
P 		66.7
(3)
P 		48.6
(-2)
P 		45
(-3)
P 		53.4
(-0.7)
P 		59.9
(1.1)
P 		22
avr 49.1
(-1.7) 		64.2
(3) 		44.8
(-3) 		54.3
(-0.1) 		52.3
(-0.7) 		52.2
(-0.7) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181057_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18573
Sequence Type Exemplar sequence
Representative Public ID T14F9.2 NCBI
Target Description T14F9.2 /REP_DB=WormBase Gene ID /WP=CE07498 /TR=Q22493 /GB=AAA91265.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076010(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076010 NCBI Caenorhabditis elegans T14F9.2 (T14F9.2) mRNA, complete cds. 11/11 None
SNAP00000024570 ENSEMBL cdna:SNAP chromosome:CEL140:X:2234318:2236457:1 9/11 None
GENEFINDER00000024577 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2234318:2236457:1 11/11 None
T14F9.2 ENSEMBL cdna:known chromosome:CEL140:X:2233989:2236678:1 gene:T14F9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2233988-2236457(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T14F9.2
Entrez Gene 188500 Entrez gene
SwissProt Q22493 EMBL-EBI
WormBase CE07498 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA91265 Hypothetical protein T14F9.2 [Caenorhabditis elegans] ref|NP_508411.1| T14F9.2 [Caenorhabditis elegans] 0.0
blast CAE68918 Hypothetical protein CBG14897 [Caenorhabditis briggsae] 1.0E-50
blast CAE68918 Hypothetical protein CBG14897 [Caenorhabditis briggsae] 2.0E-40
blast CAE61307 Hypothetical protein CBG05142 [Caenorhabditis briggsae] 4.0E-31
blast CAE61307 Hypothetical protein CBG05142 [Caenorhabditis briggsae] 2.0E-30
Sequence
Target Sequence 
>C. ELEGANS:181057_AT
gagctgacgcttgattttacctctctgcgtactgtggcgcgcaatgttccaggatttcga
tatgataaaagcctagaacgcctcgatttgacaccagaagctgaacatcatcttccactc
catttgccaattttcacggaaactctcgatttcaacaacccgcataaacacgactattca
cgagtattctcttgttatgttagaaacgattgcacccaatacccaaatcgattgaaggga
actgtcgtttctgagactgggcttggaatcggttttatgtgcttccaggacaacatgaaa
gactatcttggcaatgatttggaaaagggcacattcaatgcagccaattacagatttctc
gccgtagaaggaaacattaatcccagcaacctttacgaacaatttgaagtgttcaaagtg
gtgaacattcccttcggctttgacaacaatcttgtcacaaccgggaacgaaacgatctac
cgggtgcatttcaatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTGACGCTTGATTTTACCTCTC 399 387 589 Antisense
TACTGTGGCGCGCAATGTTCCAGGA 293 647 618 Antisense
ACGCCTCGATTTGACACCAGAAGCT 167 91 666 Antisense
GAAACTCTCGATTTCAACAACCCGC 344 357 727 Antisense
GGAACTGTCGTTTCTGAGACTGGGC 127 529 826 Antisense
AATCGGTTTTATGTGCTTCCAGGAC 31 169 855 Antisense
GCAGCCAATTACAGATTTCTCGCCG 319 313 928 Antisense
TTAATCCCAGCAACCTTTACGAACA 327 683 965 Antisense
CAAAGTGGTGAACATTCCCTTCGGC 49 193 1002 Antisense
TTCCCTTCGGCTTTGACAACAATCT 63 697 1016 Antisense
GATCTACCGGGTGCATTTCAATTTG 28 421 1062 Antisense
Sequence Source Affymetrix Proprietary Database