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[181056_at]

Description C31H1.6 /REP_DB=WormBase Gene ID /WP=CE04126 /TR=Q18341 /GB=AAA83610.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 13      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 21      6grp_total > 14      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 891
1 2 3 4 range
A 1686.5
(3)
P 		1084.8
(-1.4)
P 		863.4
(-3)
P 		996.1
(-2)
P 		823
B 1680.3
(3)
P 		1317
(-0.3)
P 		1025.2
(-3)
P 		1134.1
(-2)
P 		655
C 1754
(3)
P 		1054.3
(-2.4)
P 		980.8
(-3)
P 		1022.2
(-2.7)
P 		773
avr 1706.9
(3) 		1152
(-1.4) 		956.5
(-3) 		1050.8
(-2.2) 		750

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 893
1 2 3 4 5 6 range
A 1509
(3)
P 		1314.4
(1.6)
P 		1140.4
(0.4)
P 		1043.3
(-0.2)
P 		792
(-2)
P 		649
(-3)
P 		860
B 1477.7
(3)
P 		1398
(2.4)
P 		1238.3
(1.2)
P 		1044.7
(-0.3)
P 		907.7
(-1.4)
P 		697.6
(-3)
P 		780
C 1513
(3)
P 		1421.2
(2.4)
P 		1149.8
(0.6)
P 		1054
(-0.1)
P 		620.1
(-3)
P 		795.7
(-1.8)
P 		893
avr 1499.9
(3) 		1377.9
(2.1) 		1176.2
(0.5) 		1047.3
(-0.5) 		773.3
(-2.5) 		714.1
(-3) 		786
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 468
1 2 3 4 range
A 614.1
(3)
P 		235.5
(-1.9)
P 		225.7
(-2)
P 		145.8
(-3)
P 		468
B 535.8
(3)
P 		325.3
(-1.2)
P 		237.6
(-3)
P 		241.7
(-2.9)
P 		298
C 580.6
(3)
P 		303.1
(-1.1)
P 		341.8
(-0.5)
P 		172.4
(-3)
P 		408
avr 576.8
(3) 		288
(-1.4) 		268.4
(-1.7) 		186.6
(-3) 		390

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 403
1 2 3 4 5 6 range
A 278.2
(-0.7)
P 		467.5
(3)
P 		248.4
(-1.2)
P 		264.6
(-0.9)
P 		239
(-1.4)
P 		158
(-3)
P 		310
B 514.2
(3)
P 		465.3
(1.8)
P 		300.7
(-2)
P 		276.7
(-2.6)
P 		368.8
(-0.4)
P 		260.1
(-3)
P 		254
C 560.8
(3)
P 		433.6
(0.9)
P 		292.7
(-1.5)
P 		212
(-2.8)
P 		200.7
(-3)
P 		266.4
(-1.9)
P 		360
avr 451.1
(2.9) 		455.5
(3) 		280.6
(-1.6) 		251.1
(-2.4) 		269.5
(-1.9) 		228.2
(-3) 		227
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181056_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10741
Sequence Type Exemplar sequence
Representative Public ID C31H1.6 NCBI
Target Description C31H1.6 /REP_DB=WormBase Gene ID /WP=CE04126 /TR=Q18341 /GB=AAA83610.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068465(11), NM_182299(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068465 NCBI Caenorhabditis elegans C31H1.6a (C31H1.6) mRNA, complete cds. 11/11 None
NM_182299 NCBI Caenorhabditis elegans C31H1.6b (C31H1.6) mRNA, complete cds. 11/11 None
SNAP00000016610 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5800496:5802738:-1 11/11 None
GENEFINDER00000016616 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5800496:5805416:-1 11/11 None
C31H1.6a ENSEMBL cdna:known chromosome:CEL140:IV:5800331:5807021:-1 gene:C31H1.6 11/11 None
C31H1.6b ENSEMBL cdna:known chromosome:CEL140:IV:5800496:5805416:-1 gene:C31H1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5800501-5805472(-) 98.58 98.58
Public Domain and Genome References
Ensembl C31H1.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83610 Hypothetical protein C31H1.6a [Caenorhabditis elegans] ref|NP_500866.2| C31H1.6a [Caenorhabditis elegans] 1.0E-172
blast CAE72653 Hypothetical protein CBG19860 [Caenorhabditis briggsae] 1.0E-163
blast AAN84855 Hypothetical protein C31H1.6b [Caenorhabditis elegans] ref|NP_872099.1| C31H1.6b [Caenorhabditis elegans] 1.0E-160
blast AAA83610 Hypothetical protein C31H1.6a [Caenorhabditis elegans] ref|NP_500866.2| C31H1.6a [Caenorhabditis elegans] 1.0E-160
Sequence
Target Sequence 
>C. ELEGANS:181056_AT
aaaacggaacgatgcactcgcagctcttcaactgtaatcatcgaaaagggagtttgccgt
ggagcagaagtttcactgaaactgaaaactccttgtgaagttgtggaagcaaatgctgga
tttactacagaagttatgttgaatcatattggagaaaatacttctgaagaagaattgaca
tggggtgttgatagttgtgttaaggtgccaccaggtgcagaaactgttgctgaactcgtg
attattgaagatattgtaactcgcgatttccgcatcgaaaaccgtctgagtggcaaagtt
ttggtgacaataaccaacttgaaagaaaacaacagtttggtcacaattatcgaaggaaat
atctgtgatatcatccgaggaatgcctgattacacagctaaaggattccgctttgatgga
cctgctgccatctacgagacccgcggccagtgcatcttccgtttcggaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACGGAACGATGCACTCGCAGCT 498 129 403 Antisense
CACTCGCAGCTCTTCAACTGTAATC 587 197 417 Antisense
CGAAAAGGGAGTTTGCCGTGGAGCA 443 223 444 Antisense
GTGCCACCAGGTGCAGAAACTGTTG 150 479 607 Antisense
GAAACTGTTGCTGAACTCGTGATTA 592 357 622 Antisense
TTGTAACTCGCGATTTCCGCATCGA 84 709 656 Antisense
TCCGCATCGAAAACCGTCTGAGTGG 109 595 671 Antisense
GAGGAATGCCTGATTACACAGCTAA 539 405 779 Antisense
AAGGATTCCGCTTTGATGGACCTGC 3 161 803 Antisense
TTGATGGACCTGCTGCCATCTACGA 151 707 815 Antisense
CCAGTGCATCTTCCGTTTCGGAATT 52 273 849 Antisense
Sequence Source Affymetrix Proprietary Database