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[181055_at]

Description T19D7.2 /REP_DB=WormBase Gene ID /WP=CE07518 /TR=Q22584 /GB=AAK39296.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 81      4grp_high_8_8 > 46      6grp_total > 82      4grp_total > 49      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1091
1 2 3 4 range
A 44.4
(-3)
A 		1108.1
(3)
P 		851.1
(1.6)
P 		111.2
(-2.6)
P 		1064
B 28.9
(-3)
P 		1011.5
(2.4)
P 		1120
(3)
P 		54.4
(-2.9)
A 		1091
C 50.8
(-3)
A 		1011.2
(3)
P 		889.9
(2.2)
P 		173.9
(-2.2)
P 		960
avr 41.4
(-3) 		1043.6
(3) 		953.7
(2.5) 		113.2
(-2.6) 		1002

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 675
1 2 3 4 5 6 range
A 142.1
(-3)
A 		451.1
(0.2)
P 		502.3
(0.7)
P 		721.7
(3)
P 		717.6
(3)
P 		258.1
(-1.8)
P 		580
B 140.9
(-3)
P 		536.4
(0.5)
P 		525.1
(0.4)
P 		693.2
(1.9)
P 		815.7
(3)
P 		399.3
(-0.7)
P 		675
C 141.8
(-3)
P 		623.2
(1.9)
P 		344.4
(-0.9)
P 		734.6
(3)
P 		734.3
(3)
P 		379.9
(-0.6)
P 		593
avr 141.6
(-3) 		536.9
(0.9) 		457.3
(0.1) 		716.5
(2.6) 		755.9
(3) 		345.8
(-1) 		614
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 301
1 2 3 4 range
A 16.2
(-3)
A 		240.5
(3)
P 		222.5
(2.5)
P 		16.3
(-3)
P 		224
B 9.2
(-3)
P 		249.8
(2.8)
P 		259.5
(3)
P 		11.6
(-2.9)
A 		250
C 16.8
(-3)
A 		290.7
(2.6)
P 		310.1
(3)
P 		29.3
(-2.7)
P 		293
avr 14.1
(-3) 		260.3
(2.9) 		264
(3) 		19.1
(-2.9) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 305
1 2 3 4 5 6 range
A 26.2
(-3)
A 		160.4
(1.2)
P 		109.4
(-0.4)
P 		183.1
(1.9)
P 		216.5
(3)
P 		62.9
(-1.8)
P 		190
B 49
(-3)
P 		178.6
(-0.2)
P 		127.5
(-1.3)
P 		183.6
(-0.1)
P 		331.4
(3)
P 		148.9
(-0.9)
P 		282
C 52.6
(-3)
P 		190.2
(1.5)
P 		87.7
(-1.9)
P 		147.7
(0.1)
P 		237.6
(3)
P 		127.2
(-0.6)
P 		185
avr 42.6
(-3) 		176.4
(0.7) 		108.2
(-1.2) 		171.5
(0.5) 		261.8
(3) 		113
(-1.1) 		219
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181055_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18423
Sequence Type Exemplar sequence
Representative Public ID T19D7.2 NCBI
Target Description T19D7.2 /REP_DB=WormBase Gene ID /WP=CE07518 /TR=Q22584 /GB=AAK39296.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075734(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075734 NCBI Caenorhabditis elegans T19D7.2 (T19D7.2) mRNA, complete cds. 11/11 None
GENEFINDER00000005323 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:656264:658423:1 11/11 None
SNAP00000005311 ENSEMBL cdna:SNAP chromosome:CEL140:X:656748:658423:1 11/11 None
T19D7.2 ENSEMBL cdna:known chromosome:CEL140:X:657772:658423:1 gene:T19D7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:657771-658423(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19D7.2
Entrez Gene 188604 Entrez gene
SwissProt Q22584 EMBL-EBI
WormBase CE07518 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39296 Hypothetical protein T19D7.2 [Caenorhabditis elegans] ref|NP_508135.1| T19D7.2 [Caenorhabditis elegans] 1.0E-81
blast AAK39296 Hypothetical protein T19D7.2 [Caenorhabditis elegans] ref|NP_508135.1| T19D7.2 [Caenorhabditis elegans] 6.0E-81
blast AAK39296 Hypothetical protein T19D7.2 [Caenorhabditis elegans] ref|NP_508135.1| T19D7.2 [Caenorhabditis elegans] 9.0E-81
blast CAE63638 Hypothetical protein CBG08134 [Caenorhabditis briggsae] 2.0E-76
blast CAE63638 Hypothetical protein CBG08134 [Caenorhabditis briggsae] 1.0E-75
blast AAK39295 Hypothetical protein T19D7.3 [Caenorhabditis elegans] ref|NP_508134.1| T19D7.3 [Caenorhabditis elegans] 1.0E-40
blast CAA92025 Hypothetical protein W04G3.3 [Caenorhabditis elegans] ref|NP_509852.2| W04G3.3 [Caenorhabditis elegans] 5.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000005323 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:181055_AT
gaatcgggaaattcgtcagctttcagtttgcaggaaaagttcagagcaggaagtgtagat
gcgggggagaaagttgcatttggatacggaataattcatcacgagagaacatatgtctat
atgcaggatgatccgtgtccatatcaaattgtagtagttggcccaataaataagcaacac
aaccagtatgaatacctaattctctcaaattgggctcgtttcccaatgattggtttagtt
cgagatttgagaaagttctataaagagtacaaggatcaagtggagaccgatttggaaaaa
gccggattcatggatgatgtcacaggaagcaaccctattcattacgccgactggtcacag
tgcaaaaaagcaactccatacaattatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGGGAAATTCGTCAGCTTTCA 583 327 25 Antisense
ATTCGTCAGCTTTCAGTTTGCAGGA 495 9 35 Antisense
GCAGGATGATCCGTGTCCATATCAA 437 311 147 Antisense
AGCAACACAACCAGTATGAATACCT 83 77 197 Antisense
ATTCTCTCAAATTGGGCTCGTTTCC 685 9 223 Antisense
GGGCTCGTTTCCCAATGATTGGTTT 408 493 236 Antisense
GGATCAAGTGGAGACCGATTTGGAA 429 511 297 Antisense
AAGCCGGATTCATGGATGATGTCAC 306 149 323 Antisense
AGGAAGCAACCCTATTCATTACGCC 655 53 348 Antisense
ATTACGCCGACTGGTCACAGTGCAA 524 13 365 Antisense
AAAAAGCAACTCCATACAATTATCT 182 129 389 Antisense
Sequence Source Affymetrix Proprietary Database