[Home] | [Total List]

[181054_at]

Description C45H4.9 /REP_DB=WormBase Gene ID /WP=CE08742 /TR=O44695 /GB=AAC25875.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 12      6grp_cgc > 85      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 26
(-3)
A 		45.9
(-0.5)
A 		39.2
(-1.3)
A 		72.9
(3)
P 		47
B 39.3
(3)
A 		31
(1.1)
A 		12.4
(-3)
A 		37.8
(2.7)
A 		27
C 30
(-0.3)
A 		7
(-3)
A 		12
(-2.4)
A 		58.9
(3)
P 		52
avr 31.8
(-1.2) 		28
(-1.8) 		21.2
(-3) 		56.5
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 5.5
(-2.7)
A 		10.6
(-2.1)
A 		27
(-0.1)
A 		52.8
(3)
A 		3.9
(-2.9)
A 		3.4
(-3)
A 		49
B 6.3
(-2.6)
A 		3.4
(-3)
A 		4.4
(-2.9)
A 		45.4
(3)
A 		39.1
(2.1)
A 		4.9
(-2.8)
A 		42
C 37.1
(-0.7)
A 		25.1
(-2.2)
A 		67.9
(3)
A 		18.8
(-2.9)
A 		44.2
(0.1)
A 		18.1
(-3)
A 		50
avr 16.3
(-1.5) 		13
(-2.2) 		33.1
(1.8) 		39
(3) 		29.1
(1) 		8.8
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 9.5
(-3)
A 		10
(-0.5)
A 		10.3
(1)
A 		10.7
(3)
P 		1
B 12.5
(3)
A 		7.7
(0)
A 		2.9
(-3)
A 		8.1
(0.3)
A 		10
C 9.9
(3)
A 		2
(-3)
A 		4.2
(-1.3)
A 		9.9
(3)
P 		8
avr 10.6
(3) 		6.6
(-2) 		5.8
(-3) 		9.6
(1.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1
(-2.9)
A 		3.8
(-1.6)
A 		5.9
(-0.6)
A 		13.4
(3)
A 		1.2
(-2.8)
A 		0.8
(-3)
A 		13
B 2.2
(-2.6)
A 		1.1
(-3)
A 		1.1
(-3)
A 		12
(1.4)
A 		15.9
(3)
A 		1.8
(-2.7)
A 		15
C 13.7
(1.4)
A 		7.6
(-1.3)
A 		17.3
(3)
A 		3.8
(-3)
A 		14.3
(1.7)
A 		6.1
(-2)
A 		14
avr 5.6
(-0.9) 		4.2
(-2) 		8.1
(1.1) 		9.7
(2.4) 		10.5
(3) 		2.9
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181054_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15961
Sequence Type Exemplar sequence
Representative Public ID C45H4.9 NCBI
Target Description C45H4.9 /REP_DB=WormBase Gene ID /WP=CE08742 /TR=O44695 /GB=AAC25875.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071182(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071182 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-23) (srbc-23) mRNA, complete cds. 9/11 None
C45H4.9 ENSEMBL cdna:known chromosome:CEL140:V:2153402:2154940:1 gene:C45H4.9 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009341 4/11 Cross Hyb Matching Probes None
GENEFINDER00000009359 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2153401-2154940(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-23
Ensembl C45H4.9
Entrez Gene 183490 Entrez gene
SwissProt O44695 EMBL-EBI
WormBase CE38052 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25875 Serpentine receptor, class bc (class b-like) protein 23 [Caenorhabditis elegans] ref|NP_503583.2| Serpentine Receptor, class BC (class B-like) family member (srbc-23) [Caenorhabditis elegans] 1.0E-124
blast AAC25873 Serpentine receptor, class bc (class b-like) protein 22 [Caenorhabditis elegans] 6.0E-52
blast NP_503585 Serpentine Receptor, class BC (class B-like) family member (srbc-22) [Caenorhabditis elegans] 2.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 2.1E-91
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503583.2 6 10-32,45-67,82-104,124-146,179-198,211-233
C45H4.9 6 10-32,45-67,82-104,124-146,179-198,211-233
Sequence
Target Sequence 
>C. ELEGANS:181054_AT
cacaagccgtggcaattttcacccccatcttctaccgtaatcatcgttcacttgttacta
attcagtgattctgtgtctaatatttggctatgctattttccaatactcatttatatatt
atttctgcaattttgaattaacttttccaagaaattgtctgacaattggttgttccataa
acgcatgttccagtcggttttggacaaagtcgaaattggtctgcgctgagccatactttt
ccgttttcataaaaacttttcaggttatttttgtcctcactttctcgttcgctgctcttt
tatcatcgaagttgctctggaaggtgttcaaaaaagataacaaggattttaataaagcca
atcttctagcgctaattgatgccgcaatcatatttctgtttgatttcttatcaatcgtat
ttttcaactttactgatcgtgtggagacattcagtattcataacattggaccatttgcaa
catctctgaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACAAGCCGTGGCAATTTTCACCCC 632 193 299 Antisense
CCCATCTTCTACCGTAATCATCGTT 541 257 322 Antisense
TCATCGTTCACTTGTTACTAATTCA 31 621 339 Antisense
GGCTATGCTATTTTCCAATACTCAT 518 537 385 Antisense
AAACGCATGTTCCAGTCGGTTTTGG 301 127 477 Antisense
AATTGGTCTGCGCTGAGCCATACTT 140 177 512 Antisense
CAGGTTATTTTTGTCCTCACTTTCT 700 197 559 Antisense
CGTTCGCTGCTCTTTTATCATCGAA 540 247 584 Antisense
TAAAGCCAATCTTCTAGCGCTAATT 144 641 651 Antisense
GATGCCGCAATCATATTTCTGTTTG 382 415 676 Antisense
GGACCATTTGCAACATCTCTGAAAC 254 523 766 Antisense
Sequence Source Affymetrix Proprietary Database