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[181052_at]

Description F26G1.4 /REP_DB=WormBase Gene ID /WP=CE02696 /TR=Q19829 /GB=AAK31501.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 71      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 54      6grp_total > 71      4grp_total > 57      6grp_highest_sub > 04      6grp_cgc > 85      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 328
1 2 3 4 range
A 547.3
(-1.8)
P 		757.8
(2.4)
P 		790.2
(3)
P 		488.7
(-3)
P 		302
B 540.8
(-1.5)
P 		681.4
(2.5)
P 		699.4
(3)
P 		486.9
(-3)
P 		213
C 588.9
(-0.5)
P 		593.9
(-0.4)
P 		768.5
(3)
P 		461.8
(-3)
P 		307
avr 559
(-1.2) 		677.7
(1.4) 		752.7
(3) 		479.1
(-3) 		274

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1200
1 2 3 4 5 6 range
A 903.1
(-1.9)
P 		743.4
(-2.8)
P 		1113.1
(-0.7)
P 		1761.3
(3)
P 		1236.3
(-0)
P 		714
(-3)
P 		1047
B 760.5
(-2.7)
P 		723.9
(-3)
P 		1144.6
(0.1)
P 		1547.7
(3)
P 		1329.6
(1.4)
P 		720.9
(-3)
P 		827
C 561.8
(-3)
P 		726.8
(-2.2)
P 		1292.2
(0.8)
P 		1728.4
(3)
P 		1085.4
(-0.3)
P 		711.2
(-2.2)
P 		1167
avr 741.8
(-2.8) 		731.4
(-2.9) 		1183.3
(-0.1) 		1679.1
(3) 		1217.1
(0.1) 		715.4
(-3) 		964
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 199.3
(2.7)
P 		164.5
(1.1)
P 		206.6
(3)
P 		71.5
(-3)
P 		135
B 172.4
(3)
P 		168.3
(2.6)
P 		162.1
(2.1)
P 		103.8
(-3)
P 		69
C 195
(0.7)
P 		170.8
(-0.1)
P 		267.8
(3)
P 		77.9
(-3)
P 		190
avr 188.9
(1.9) 		167.9
(0.9) 		212.2
(3) 		84.4
(-3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 374
1 2 3 4 5 6 range
A 166.5
(-3)
P 		264.4
(-0.9)
P 		242.4
(-1.4)
P 		446.7
(3)
P 		373.1
(1.4)
P 		173.8
(-2.8)
P 		280
B 264.6
(-2.5)
P 		241
(-3)
P 		277.9
(-2.3)
P 		409.9
(0.4)
P 		540.2
(3)
P 		268.8
(-2.4)
P 		299
C 208.2
(-3)
P 		221.8
(-2.4)
P 		328.9
(2.1)
P 		347.6
(2.8)
P 		351.2
(3)
P 		238.1
(-1.7)
P 		143
avr 213.1
(-3) 		242.4
(-2.2) 		283.1
(-1) 		401.4
(2.4) 		421.5
(3) 		226.9
(-2.6) 		208
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181052_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4536
Sequence Type Exemplar sequence
Representative Public ID F26G1.4 NCBI
Target Description F26G1.4 /REP_DB=WormBase Gene ID /WP=CE02696 /TR=Q19829 /GB=AAK31501.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062454(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062454 NCBI Caenorhabditis elegans Toxin-regulated Target of p38MAPK family member (ttm-2) (ttm-2) mRNA, complete cds. 11/11 None
SNAP00000000802 ENSEMBL cdna:SNAP chromosome:CEL140:II:4763364:4766358:-1 10/11 None
GENEFINDER00000000819 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4764074:4766358:-1 11/11 None
F26G1.4 ENSEMBL cdna:known chromosome:CEL140:II:4764175:4766358:-1 gene:F26G1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4764173-4766357(-) 99.91 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ttm-2
Ensembl F26G1.4
Entrez Gene 184995 Entrez gene
SwissProt Q19829 EMBL-EBI
WormBase CE02696 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31501 Hypothetical protein F26G1.4 [Caenorhabditis elegans] ref|NP_494855.1| Toxin-regulated Target of p38MAPK family member (ttm-2) [Caenorhabditis elegans] 0.0
blast CAE73210 Hypothetical protein CBG20615 [Caenorhabditis briggsae] 1.0E-161
blast CAE73210 Hypothetical protein CBG20615 [Caenorhabditis briggsae] 1.0E-159
blast CAE73210 Hypothetical protein CBG20615 [Caenorhabditis briggsae] 1.0E-149
Sequence
Target Sequence 
>C. ELEGANS:181052_AT
gaatctatcaaacggcaggtcactccgaagccggtcaattttcagaaaacttttaacttt
ccaaaggagcgatcaatttctttggaaatgctcctacctacagatgttttcacaactact
gccagactagaaaattgtatcactatttgtaatagatggaaacaatcactaaaatatgtg
catttgaacattgttcgtcgcatttctgctttgaatcaaaataatgaagttatcgatacg
gttaaaattgatactacaggagttggccttcccagtaaaacaaaaatcgctgttggggaa
acctactcattccgtccgacattcaatgttcctgctttaccaccaaatattcatgtgaat
ggattgtttaaaacggaatattcattaaaagtgacaattggaagagctcataattttgtt
ttggcatcctatgaagttcccattacaattgttacaatggatcagagttccagaaggtca
atgcaaaaagaagacattctcgtcgatatctctgcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCTATCAAACGGCAGGTCACTC 338 327 529 Antisense
GTCACTCCGAAGCCGGTCAATTTTC 533 463 547 Antisense
GGAAATGCTCCTACCTACAGATGTT 345 527 612 Antisense
TGTTTTCACAACTACTGCCAGACTA 8 561 633 Antisense
TTGAACATTGTTCGTCGCATTTCTG 589 703 712 Antisense
TACTACAGGAGTTGGCCTTCCCAGT 226 645 780 Antisense
ATCGCTGTTGGGGAAACCTACTCAT 32 37 814 Antisense
CATTCCGTCCGACATTCAATGTTCC 220 209 836 Antisense
TTCCTGCTTTACCACCAAATATTCA 327 699 857 Antisense
GGCATCCTATGAAGTTCCCATTACA 205 537 951 Antisense
GACATTCTCGTCGATATCTCTGCAT 385 371 1021 Antisense
Sequence Source Affymetrix Proprietary Database