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[181051_at]

Description T19D7.6 /REP_DB=WormBase Gene ID /WP=CE07522 /TR=Q22587 /GB=AAK39298.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 93      4grp_high_8_8 > 22      6grp_highest_nonorm > 92      6grp_total > 84      4grp_total > 09      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1012
1 2 3 4 range
A 70.8
(-3)
P 		223.7
(-1.8)
P 		268.3
(-1.4)
P 		822
(3)
P 		751
B 80.5
(-3)
P 		237.6
(-2.1)
P 		182.6
(-2.4)
P 		1081.8
(3)
P 		1001
C 70.1
(-3)
A 		240.9
(-1.3)
P 		217.7
(-1.5)
P 		664
(3)
P 		594
avr 73.8
(-3) 		234.1
(-1.8) 		222.9
(-1.9) 		855.9
(3) 		782

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 480
1 2 3 4 5 6 range
A 62.7
(-3)
P 		133.3
(-2)
P 		225.6
(-0.7)
P 		467.9
(2.6)
P 		495.2
(3)
P 		445.7
(2.3)
P 		433
B 83.9
(-3)
P 		170.4
(-1.8)
P 		282.1
(-0.2)
P 		435.2
(1.9)
P 		514.3
(3)
P 		400.3
(1.4)
P 		430
C 96.8
(-3)
P 		167.2
(-2.1)
P 		254.6
(-0.9)
P 		534.3
(2.9)
P 		497.6
(2.4)
P 		542.5
(3)
P 		446
avr 81.1
(-3) 		157
(-1.9) 		254.1
(-0.5) 		479.1
(2.7) 		502.4
(3) 		462.8
(2.4) 		421
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 25.8
(-3)
P 		48.6
(-1.6)
P 		70.1
(-0.2)
P 		120.3
(3)
P 		95
B 25.7
(-3)
P 		58.7
(-2)
P 		42.3
(-2.5)
P 		230.5
(3)
P 		205
C 23.2
(-3)
A 		69.3
(0.1)
P 		75.9
(0.6)
P 		112
(3)
P 		89
avr 24.9
(-3) 		58.9
(-1.4) 		62.8
(-1.2) 		154.3
(3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 11.6
(-3)
P 		47.4
(-1.4)
P 		49.1
(-1.4)
P 		118.7
(1.7)
P 		149.4
(3)
P 		108.5
(1.2)
P 		138
B 29.2
(-3)
P 		56.7
(-2.1)
P 		68.5
(-1.7)
P 		115.3
(-0.1)
P 		209
(3)
P 		149.3
(1)
P 		180
C 35.9
(-3)
P 		51
(-2.4)
P 		64.8
(-1.8)
P 		107.5
(-0.1)
P 		161
(2.2)
P 		181.6
(3)
P 		146
avr 25.6
(-3) 		51.7
(-1.9) 		60.8
(-1.6) 		113.8
(0.6) 		173.1
(3) 		146.5
(1.9) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181051_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18406
Sequence Type Exemplar sequence
Representative Public ID T19D7.6 NCBI
Target Description T19D7.6 /REP_DB=WormBase Gene ID /WP=CE07522 /TR=Q22587 /GB=AAK39298.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075737(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075737 NCBI Caenorhabditis elegans T19D7.6 (T19D7.6) mRNA, complete cds. 11/11 None
GENEFINDER00000005322 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:669756:670800:-1 11/11 None
T19D7.6 ENSEMBL cdna:known chromosome:CEL140:X:669756:670799:-1 gene:T19D7.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005314 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:669755-670800(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19D7.6
Entrez Gene 188606 Entrez gene
SwissProt Q22587 EMBL-EBI
WormBase CE35774 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39298 Hypothetical protein T19D7.6 [Caenorhabditis elegans] ref|NP_508138.2| T19D7.6 [Caenorhabditis elegans] 5.0E-84
blast AAK39298 Hypothetical protein T19D7.6 [Caenorhabditis elegans] ref|NP_508138.2| T19D7.6 [Caenorhabditis elegans] 2.0E-83
blast CAE63635 Hypothetical protein CBG08131 [Caenorhabditis briggsae] 9.0E-49
blast CAE63635 Hypothetical protein CBG08131 [Caenorhabditis briggsae] 1.0E-48
Sequence
Target Sequence 
>C. ELEGANS:181051_AT
cctcactttctcttttttgacagctgctgcgtgcctgtacacgcctgtgttgcccatcaa
atttaccaaaattctccaatttctatgaagaatgaaataaactcacatgttgtactttca
ggactttgtttgactagtattccaagcacagttctcaaaaaccgtactcgtatagaaaaa
ctcacattggacaacaatgttcttactgaaaattctttcaatatgccaaagttcgccaat
cttaaagaactttcagtcagaaataataagattcgaaacctaggagtgcttcttgcaaac
attcagaaaaattgtcccaatatagaagtgctccgagtaaaaaacaatcctggaattcca
gaaaaattcacagaaaaggaaaaaatgttgatttcaaaggttttgaaaaaactacgtgtg
ttgaatggtctagaaacacaccgccaaaaacgttattcgggatgctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCACTTTCTCTTTTTTGACAGCT 173 269 55 Antisense
TTTTGACAGCTGCTGCGTGCCTGTA 469 669 69 Antisense
CCTGTGTTGCCCATCAAATTTACCA 605 265 98 Antisense
CTCACATGTTGTACTTTCAGGACTT 218 229 156 Antisense
GGACTTTGTTTGACTAGTATTCCAA 553 523 175 Antisense
GCACAGTTCTCAAAAACCGTACTCG 104 317 200 Antisense
AATATGCCAAAGTTCGCCAATCTTA 198 173 274 Antisense
CGAAACCTAGGAGTGCTTCTTGCAA 320 251 328 Antisense
GTCCCAATATAGAAGTGCTCCGAGT 560 475 368 Antisense
GAATGGTCTAGAAACACACCGCCAA 189 333 477 Antisense
CAAAAACGTTATTCGGGATGCTCCA 477 189 499 Antisense
Sequence Source Affymetrix Proprietary Database