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[181049_at] 7TM chemoreceptor, srv family

Description T22B7.6 /REP_DB=WormBase Gene ID /WP=CE13950 /TR=Q23041 /GB=AAB04593.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 14      6grp_cgc > 88      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 37.6
(3)
P 		8.7
(-2.1)
A 		22.7
(0.4)
A 		3.4
(-3)
A 		34
B 20.4
(1.8)
A 		24.2
(3)
A 		5.8
(-3)
A 		8.8
(-2)
A 		18
C 53.1
(-0.4)
M 		13.3
(-2.6)
A 		5.6
(-3)
A 		116.3
(3)
P 		111
avr 37
(1.9) 		15.4
(-2.2) 		11.4
(-3) 		42.8
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 3.4
(-3)
A 		23.1
(0.8)
A 		5
(-2.7)
A 		20.7
(0.3)
A 		34.9
(3)
A 		6.4
(-2.4)
A 		32
B 3.2
(-3)
A 		13.9
(0.8)
A 		16.2
(1.6)
A 		7
(-1.7)
A 		20.1
(3)
A 		3.3
(-3)
A 		17
C 30
(2.7)
A 		6.3
(-3)
A 		9
(-2.4)
A 		18.9
(0)
A 		15.3
(-0.8)
A 		31.3
(3)
A 		25
avr 12.2
(-2.1) 		14.4
(-1.1) 		10.1
(-3) 		15.5
(-0.6) 		23.4
(3) 		13.7
(-1.4) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 13.7
(3)
P 		1.9
(-2.4)
A 		5.9
(-0.5)
A 		0.5
(-3)
A 		13
B 6.5
(3)
A 		6
(2.4)
A 		1.3
(-3)
A 		1.9
(-2.3)
A 		5
C 17.6
(2.3)
M 		3.8
(-2.4)
A 		1.9
(-3)
A 		19.6
(3)
P 		18
avr 12.6
(3) 		3.9
(-2.4) 		3
(-3) 		7.3
(-0.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.6
(-3)
A 		8.2
(1.6)
A 		1.1
(-2.7)
A 		5.3
(-0.2)
A 		10.5
(3)
A 		1.6
(-2.4)
A 		10
B 1.1
(-3)
A 		4.6
(-0)
A 		3.9
(-0.6)
A 		1.9
(-2.3)
A 		8.2
(3)
A 		1.2
(-2.9)
A 		7
C 11.1
(3)
A 		1.9
(-3)
A 		2.3
(-2.7)
A 		3.8
(-1.8)
A 		4.9
(-1)
A 		10.5
(2.6)
A 		9
avr 4.3
(-0.9) 		4.9
(-0.3) 		2.4
(-3) 		3.7
(-1.6) 		7.9
(3) 		4.4
(-0.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181049_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16855
Sequence Type Exemplar sequence
Representative Public ID T22B7.6 NCBI
Target Description T22B7.6 /REP_DB=WormBase Gene ID /WP=CE13950 /TR=Q23041 /GB=AAB04593.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076549(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076549 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-7) (srv-7) mRNA, complete cds. 10/11 None
GENEFINDER00000005791 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5642875:5644898:-1 9/11 None
T22B7.5 ENSEMBL cdna:known chromosome:CEL140:X:5642875:5644898:-1 gene:T22B7.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005784 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5644183-5645217(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srv family
Gene Symbol srv-7
Ensembl T22B7.5
Entrez Gene 259994 Entrez gene
SwissProt Q23041 EMBL-EBI
WormBase CE33836 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04593 Serpentine receptor, class v protein 7 [Caenorhabditis elegans] ref|NP_508950.2| Serpentine Receptor, class V family member (srv-7) [Caenorhabditis elegans] 0.0
blast AAB04593 Serpentine receptor, class v protein 7 [Caenorhabditis elegans] ref|NP_508950.2| Serpentine Receptor, class V family member (srv-7) [Caenorhabditis elegans] 1.0E-176
blast CAE68775 Hypothetical protein CBG14717 [Caenorhabditis briggsae] 1.0E-171
blast CAE68775 Hypothetical protein CBG14717 [Caenorhabditis briggsae] 1.0E-163
blast T25904 hypothetical protein T22B7.5 - Caenorhabditis elegans 3.0E-91
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508950.2 7 20-42,55-77,97-116,137-159,187-209,240-262,272-294
T22B7.5 7 20-42,55-77,97-116,137-159,187-209,240-262,272-294
GENEFINDER00000005791 6 13-35,50-72,85-107,174-196,227-249,259-281
Sequence
Target Sequence 
>C. ELEGANS:181049_AT
cacacaccacagatggcctcaaatgcaacattgccagaatggttcgatccactggaaagc
gtagtgagcactgttttcatgttgggctcctttgtgacaatccttttgtattttgttgaa
atacttatactagtcactttgagaaacacagtttataaaggaatgttttatcaaatattc
acaattggaatcatcattgatgtcataagcctggtgaacaattattttggatgtgtgttt
cctgcaaaaggatatttccgcgatttctatttatccatgggcacgtttgtcgggcaaatg
tatcttatgattgcatggactgctagagggattcagggttgtactgttgttgcactggct
cttaatcgggccaccgctgtttgcctcccaatcaaacataagcaagtacatttggaacag
caagtacatttctctgatacacgtgttccagctaggagttgggctttgcattggttcgag
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACACACCACAGATGGCCTCAAATG 458 195 139 Antisense
ATTGCCAGAATGGTTCGATCCACTG 293 7 168 Antisense
AGTGAGCACTGTTTTCATGTTGGGC 22 61 201 Antisense
CATGTTGGGCTCCTTTGTGACAATC 459 209 216 Antisense
ATTTCCGCGATTTCTATTTATCCAT 345 17 392 Antisense
CATGGGCACGTTTGTCGGGCAAATG 661 209 414 Antisense
TGTACTGTTGTTGCACTGGCTCTTA 651 559 478 Antisense
CGCTGTTTGCCTCCCAATCAAACAT 639 255 513 Antisense
ACATTTCTCTGATACACGTGTTCCA 317 105 564 Antisense
ACGTGTTCCAGCTAGGAGTTGGGCT 345 93 579 Antisense
AGTTGGGCTTTGCATTGGTTCGAGT 298 63 595 Antisense
Sequence Source Affymetrix Proprietary Database