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[181048_at]

Description F54B11.9 /REP_DB=WormBase Gene ID /WP=CE05933 /TR=Q20743 /GB=CAA94140.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 32      6grp_total > 21      4grp_total > 52      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 519
1 2 3 4 range
A 398.1
(1.1)
P 		563.9
(3)
P 		205.9
(-1.1)
P 		44.9
(-3)
A 		519
B 452.9
(3)
P 		438.8
(2.8)
P 		316.6
(0.9)
P 		54.6
(-3)
A 		398
C 511.6
(3)
P 		433.6
(2)
P 		345.6
(0.9)
P 		46.8
(-3)
A 		465
avr 454.2
(2.7) 		478.8
(3) 		289.4
(0.4) 		48.8
(-3) 		430

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 682
1 2 3 4 5 6 range
A 391.7
(0.1)
P 		670.2
(2.7)
P 		696.8
(3)
P 		431.4
(0.4)
P 		330.4
(-0.5)
P 		75.5
(-3)
A 		621
B 300.3
(-0.5)
P 		662.5
(3)
P 		549.7
(1.9)
P 		409.2
(0.6)
P 		243.5
(-1)
P 		34.9
(-3)
P 		628
C 305.8
(-0.6)
P 		716.5
(3)
P 		602.1
(2)
P 		337.6
(-0.4)
P 		152.5
(-2)
P 		40.1
(-3)
A 		676
avr 332.6
(-0.3) 		683.1
(3) 		616.2
(2.4) 		392.7
(0.2) 		242.1
(-1.2) 		50.2
(-3) 		633
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 145
(3)
P 		122.4
(2)
P 		53.8
(-1)
P 		6.6
(-3)
A 		138
B 144.4
(3)
P 		108.4
(1.4)
P 		73.4
(-0.2)
P 		11.6
(-3)
A 		133
C 169.4
(3)
P 		124.7
(1.3)
P 		120.4
(1.2)
P 		7.9
(-3)
A 		162
avr 152.9
(3) 		118.5
(1.6) 		82.5
(0.1) 		8.7
(-3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 72.2
(-1.5)
P 		238.4
(3)
P 		151.8
(0.6)
P 		109.4
(-0.5)
P 		99.7
(-0.8)
P 		18.4
(-3)
A 		220
B 104.5
(-0.4)
P 		220.5
(3)
P 		133.5
(0.5)
P 		108.4
(-0.2)
P 		98.9
(-0.5)
P 		13
(-3)
P 		208
C 113.3
(-0.1)
P 		218.6
(3)
P 		153.2
(1.1)
P 		67.9
(-1.4)
P 		49.3
(-2)
P 		13.4
(-3)
A 		205
avr 96.7
(-0.7) 		225.8
(3) 		146.2
(0.7) 		95.2
(-0.7) 		82.6
(-1.1) 		14.9
(-3) 		211
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181048_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17327
Sequence Type Exemplar sequence
Representative Public ID F54B11.9 NCBI
Target Description F54B11.9 /REP_DB=WormBase Gene ID /WP=CE05933 /TR=Q20743 /GB=CAA94140.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077879(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077879 NCBI Caenorhabditis elegans F54B11.9 (F54B11.9) mRNA, complete cds. 11/11 None
GENEFINDER00000008296 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13606339:13608084:1 9/11 None
F54B11.9 ENSEMBL cdna:known chromosome:CEL140:X:13607310:13608161:1 gene:F54B11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13607309-13608161(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54B11.9
Entrez Gene 186216 Entrez gene
SwissProt Q20743 EMBL-EBI
WormBase CE05933 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94140 Hypothetical protein F54B11.9 [Caenorhabditis elegans] ref|NP_510280.1| F54B11.9 [Caenorhabditis elegans] 3.0E-89
blast CAA94140 Hypothetical protein F54B11.9 [Caenorhabditis elegans] ref|NP_510280.1| F54B11.9 [Caenorhabditis elegans] 6.0E-74
Sequence
Target Sequence 
>C. ELEGANS:181048_AT
tgctctgctttggaggtctggcaaaatgttttttggggcgagaagaaaaacgggagtcat
acagaatagagagaaaacagataacggaattgaataccatacgtggaatatatggtcagt
atctctacaagtttccgagaattttgtttgaaaccggccaaaactttacctacgcgtaca
gaacatctgatcctggagatgaaatctcacgaaagtggttcgtgaagttacatcacttcc
ccggctccaaagaacattctgagtttcgactgaacctcgatgatatcgattccaaaacta
tcagcgagttgtacgagacttatggaaacatgtctcctcccgatgaatacgaaaccgata
taccagtagaccctattccccgcaacaaaaaaggttttgtcaacactatcagcatccatg
acttgcttcgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCTGCTTTGGAGGTCTGGCAAA 339 579 17 Antisense
GGTCAGTATCTCTACAAGTTTCCGA 656 503 130 Antisense
GCCAAAACTTTACCTACGCGTACAG 25 271 173 Antisense
ACGCGTACAGAACATCTGATCCTGG 179 91 188 Antisense
CCCCGGCTCCAAAGAACATTCTGAG 530 261 255 Antisense
CATTCTGAGTTTCGACTGAACCTCG 363 217 271 Antisense
ATCGATTCCAAAACTATCAGCGAGT 330 35 301 Antisense
TTATGGAAACATGTCTCCTCCCGAT 522 681 336 Antisense
CGATATACCAGTAGACCCTATTCCC 401 247 372 Antisense
GTTTTGTCAACACTATCAGCATCCA 39 449 410 Antisense
TCAGCATCCATGACTTGCTTCGCGA 701 623 425 Antisense
Sequence Source Affymetrix Proprietary Database