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[181047_at]

Description B0294.3 /REP_DB=WormBase Gene ID /WP=CE23505 /TR=Q9TXQ0 /GB=AAD56299.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 2
(-3)
A 		3.5
(-1.4)
A 		5
(0.2)
A 		7.6
(3)
A 		6
B 9.1
(0.1)
A 		3.3
(-3)
A 		7.5
(-0.8)
A 		14.6
(3)
A 		11
C 2.3
(-2.9)
A 		2.2
(-2.9)
A 		1.6
(-3)
A 		34.4
(3)
A 		33
avr 4.5
(-2.4) 		3
(-3) 		4.7
(-2.4) 		18.9
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 2.9
(-1)
A 		4.3
(3)
A 		4.1
(2.4)
A 		3.8
(1.6)
A 		2.5
(-2.1)
A 		2.2
(-3)
A 		2
B 2.1
(-3)
A 		3
(-0.5)
A 		2.2
(-2.7)
A 		4.3
(3)
A 		2.1
(-3)
A 		2.8
(-1.1)
A 		2
C 3.1
(-2.3)
A 		5.6
(2.1)
A 		3.1
(-2.3)
A 		6.1
(3)
A 		2.9
(-2.6)
A 		2.7
(-3)
A 		3
avr 2.7
(-2.5) 		4.3
(1.9) 		3.1
(-1.4) 		4.7
(3) 		2.5
(-3) 		2.6
(-2.7) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.7
(-3)
A 		0.8
(-2)
A 		1.3
(3)
A 		1.1
(1)
A 		1
B 2.9
(2.5)
A 		0.8
(-3)
A 		1.7
(-0.7)
A 		3.1
(3)
A 		2
C 0.8
(-2.8)
A 		0.6
(-3)
A 		0.6
(-3)
A 		5.8
(3)
A 		5
avr 1.5
(-1.2) 		0.7
(-3) 		1.2
(-1.8) 		3.3
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.5
(3)
A 		0.9
(-0.6)
A 		1
(0)
A 		0.8
(-1.2)
A 		0.5
(-3)
A 		1
B 0.7
(-1)
A 		1
(2)
A 		0.5
(-3)
A 		1.1
(3)
A 		0.8
(0)
A 		1
(2)
A 		1
C 1.1
(-1)
A 		1.7
(3)
A 		0.8
(-3)
A 		1.2
(-0.3)
A 		0.9
(-2.3)
A 		0.9
(-2.3)
A 		1
avr 0.8
(-2.1) 		1.4
(3) 		0.7
(-3) 		1.1
(0.4) 		0.8
(-2.1) 		0.8
(-2.1) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181047_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18482
Sequence Type Exemplar sequence
Representative Public ID B0294.3 NCBI
Target Description B0294.3 /REP_DB=WormBase Gene ID /WP=CE23505 /TR=Q9TXQ0 /GB=AAD56299.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075945
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075945 NCBI Caenorhabditis elegans B0294.3 (B0294.3) mRNA, complete cds. None
GENEFINDER00000008491 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1892181:1895581:1 None
SNAP00000008487 ENSEMBL cdna:SNAP chromosome:CEL140:X:1892916:1893266:1 None
B0294.3 ENSEMBL cdna:known chromosome:CEL140:X:1892181:1893266:1 gene:B0294.3 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1892180-1893266(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0294.3
Entrez Gene 181910 Entrez gene
SwissProt Q9TXQ0 EMBL-EBI
WormBase CE35707 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD56299 Hypothetical protein B0294.3 [Caenorhabditis elegans] ref|NP_508346.3| B0294.3 [Caenorhabditis elegans] 7.0E-34
blast AAF39769 Hypothetical protein C39B5.4 [Caenorhabditis elegans] ref|NP_497515.1| C39B5.4 [Caenorhabditis elegans] 7.0E-21
blast AAK39347 Hypothetical protein Y59E1A.1 [Caenorhabditis elegans] ref|NP_508355.2| Y59E1A.1 [Caenorhabditis elegans] 5.0E-19
blast AAC68934 Hypothetical protein T12B5.10 [Caenorhabditis elegans] ref|NP_497300.1| T12B5.10 [Caenorhabditis elegans] 5.0E-19
blast NP_503905 T28A11.21 [Caenorhabditis elegans] gb|AAC48129.2| Hypothetical protein T28A11.21 [Caenorhabditis elegans] 4.0E-13
blast AAD56299 Hypothetical protein B0294.3 [Caenorhabditis elegans] ref|NP_508346.3| B0294.3 [Caenorhabditis elegans] 2.0E-12
blast AAC04395 Hypothetical protein C17B7.11 [Caenorhabditis elegans] ref|NP_503929.1| C17B7.11 [Caenorhabditis elegans] 3.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.9E-11
Sequence
Target Sequence 
>C. ELEGANS:181047_AT
aaagcctgtttcaaccatcattgcttgatatgagcctggatgttgctgactttgttttcg
aaaagatggaacccaaggatctactgacgactagaaaagtatgccgaggcttcaggacag
ccgttgatcacttcggtgttcgtttcgatacaattatttttaaattgtatgataattgca
tcaaaatgattttggacgaagagtgtatcagatatttggatgcacacagtggtggagcga
ctgtggctcacagagaacaaaagattgtattagaaagtggaaactttgtggaaattgcac
tcaacgacttgaagatggcattgaaaaatgtatcaagcttgaatatttttaacaaaacag
aagaaagagacgacatgatggtcacatcttttttgggctatttggaatcagaaaagtgta
tttacgtaaaacaaattcactttgaggtattctcatttggcggtcgtttgaattgtggag
gattcagtcttgatccgggagcttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCCTGTTTCAACCATCATTGCT 70 125 44 Antisense
ATATGAGCCTGGATGTTGCTGACTT 471 21 71 Antisense
GGAACCCAAGGATCTACTGACGACT 126 531 111 Antisense
GTATGCCGAGGCTTCAGGACAGCCG 465 453 142 Antisense
GGACAGCCGTTGATCACTTCGGTGT 89 527 158 Antisense
ATCACTTCGGTGTTCGTTTCGATAC 582 27 170 Antisense
GTGGTGGAGCGACTGTGGCTCACAG 2 487 272 Antisense
GATGGTCACATCTTTTTTGGGCTAT 29 409 420 Antisense
TGAGGTATTCTCATTTGGCGGTCGT 648 565 486 Antisense
TGGCGGTCGTTTGAATTGTGGAGGA 100 545 501 Antisense
ATTCAGTCTTGATCCGGGAGCTTGT 396 7 525 Antisense
Sequence Source Affymetrix Proprietary Database