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[181045_at]

Description B0350.1 /REP_DB=WormBase Gene ID /WP=CE06701 /TR=Q17490 /GB=AAA93447.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 16      6grp_total > 16      4grp_total > 46      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 379
1 2 3 4 range
A 558.4
(3)
P 		239.5
(-2)
P 		184.2
(-2.9)
A 		179.1
(-3)
A 		379
B 540.9
(3)
P 		252.8
(-2.2)
M 		207.5
(-3)
A 		211.3
(-2.9)
A 		333
C 478.1
(3)
P 		340.8
(0.2)
P 		215.6
(-2.4)
P 		186.8
(-3)
A 		291
avr 525.8
(3) 		277.7
(-1.5) 		202.4
(-2.8) 		192.4
(-3) 		333

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 682
1 2 3 4 5 6 range
A 743.1
(3)
P 		553.7
(0.9)
P 		229.3
(-2.7)
A 		205.5
(-3)
A 		307.2
(-1.9)
P 		268.1
(-2.3)
P 		538
B 746.6
(3)
P 		557.2
(0.9)
P 		357.3
(-1.3)
P 		333.7
(-1.5)
P 		197.6
(-3)
P 		244.7
(-2.5)
P 		549
C 879.3
(3)
P 		585
(0.4)
P 		352
(-1.7)
P 		418.2
(-1.1)
P 		199.3
(-3)
P 		276.3
(-2.3)
P 		680
avr 789.7
(3) 		565.3
(0.6) 		312.9
(-2.2) 		319.1
(-2.1) 		234.7
(-3) 		263
(-2.7) 		555
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 203.3
(3)
P 		52
(-2.1)
P 		48.1
(-2.3)
A 		26.2
(-3)
A 		177
B 172.5
(3)
P 		62.4
(-2.2)
M 		48.1
(-2.9)
A 		45
(-3)
A 		128
C 158.3
(3)
P 		98
(0.1)
P 		75.1
(-0.9)
P 		31.5
(-3)
A 		127
avr 178
(3) 		70.8
(-1.5) 		57.1
(-2) 		34.2
(-3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 276
1 2 3 4 5 6 range
A 137
(0.6)
P 		196.9
(3)
P 		49.9
(-3)
A 		52.1
(-2.9)
A 		92.7
(-1.3)
P 		65.3
(-2.4)
P 		147
B 259.8
(3)
P 		185.5
(0.5)
P 		86.8
(-2.8)
P 		88.4
(-2.7)
P 		80.3
(-3)
P 		91.2
(-2.6)
P 		180
C 325.9
(3)
P 		178.5
(-0.4)
P 		89.6
(-2.4)
P 		84.1
(-2.6)
P 		64.5
(-3)
P 		92.5
(-2.4)
P 		261
avr 240.9
(3) 		187
(1.1) 		75.4
(-3) 		74.9
(-3) 		79.2
(-2.8) 		83
(-2.7) 		166
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181045_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11216
Sequence Type Exemplar sequence
Representative Public ID B0350.1 NCBI
Target Description B0350.1 /REP_DB=WormBase Gene ID /WP=CE06701 /TR=Q17490 /GB=AAA93447.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026097(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026097 NCBI Caenorhabditis elegans UNCoordinated family member (unc-44) (unc-44) mRNA, complete cds. 11/11 None
SNAP00000023740 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5985571:6004017:1 11/11 None
GENEFINDER00000023989 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5987598:6004017:1 11/11 None
B0350.2f ENSEMBL cdna:known chromosome:CEL140:IV:5975560:6004843:1 gene:B0350.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177366 7 1 NM_001026095 175561_s_at (11), 176663_s_at (11)
NM_001026096 172153_x_at (11), 173125_s_at (11)
NM_001026097 171738_x_at (9), 172123_x_at (11), 172153_x_at (11), 173125_s_at (11), 174033_at (11), 181045_at (11)
NM_068497 171738_x_at (9), 172123_x_at (11), 172153_x_at (11), 173125_s_at (11)
NM_068500 172153_x_at (11), 173125_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5987653-6004023(+) 100.0 100.0
Public Domain and Genome References
Ensembl B0350.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93447 Uncoordinated protein 44, isoform f [Caenorhabditis elegans] ref|NP_001021268.1| UNCoordinated family member (unc-44) [Caenorhabditis elegans] 0.0
blast AAB41827 AO13 ankyrin [Caenorhabditis elegans] 0.0
blast AAA93444 Uncoordinated protein 44, isoform c [Caenorhabditis elegans] ref|NP_500898.1| UNCoordinated family member (unc-44) [Caenorhabditis elegans] gb|AAB41828.1| AO66 ankyrin [Caenorhabditis elegans] 0.0
blast CAE64691 Hypothetical protein CBG09473 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.4.5.MarR-like transcriptional regulators All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; MarR-like transcriptional regulators 6.19999980926514
Pfam IPR000488 EMBL-EBI Death domain 1.0E-20
Pfam IPR002110 EMBL-EBI Ankyrin 1.7
Pfam IPR002110 EMBL-EBI Ankyrin 4.4E-8
Pfam IPR002110 EMBL-EBI Ankyrin 1.5E-9
Pfam IPR002110 EMBL-EBI Ankyrin 4.7E-10
Pfam IPR002110 EMBL-EBI Ankyrin 5.2E-4
Pfam IPR002110 EMBL-EBI Ankyrin 0.048
Pfam IPR002110 EMBL-EBI Ankyrin 3.5E-11
Pfam IPR002110 EMBL-EBI Ankyrin 2.6E-7
Pfam IPR002110 EMBL-EBI Ankyrin 4.8E-9
Pfam IPR002110 EMBL-EBI Ankyrin 6.9E-6
Pfam IPR002110 EMBL-EBI Ankyrin 2.1E-9
Pfam IPR002110 EMBL-EBI Ankyrin 5.2E-10
Pfam IPR002110 EMBL-EBI Ankyrin 3.3E-10
Pfam IPR002110 EMBL-EBI Ankyrin 8.0E-11
Pfam IPR002110 EMBL-EBI Ankyrin 7.5E-10
Pfam IPR002110 EMBL-EBI Ankyrin 1.6E-7
Pfam IPR002110 EMBL-EBI Ankyrin 4.2E-11
Pfam IPR002110 EMBL-EBI Ankyrin 6.8E-7
Pfam IPR002110 EMBL-EBI Ankyrin 7.4E-11
Pfam IPR002110 EMBL-EBI Ankyrin 9.3E-8
Pfam IPR002110 EMBL-EBI Ankyrin 4.2E-7
Pfam IPR002110 EMBL-EBI Ankyrin 3.4E-10
Pfam IPR002110 EMBL-EBI Ankyrin 1.4E-9
Pfam IPR002110 EMBL-EBI Ankyrin 0.83
Pfam IPR000906 EMBL-EBI ZU5 domain 1.4E-61
Sequence
Target Sequence 
>C. ELEGANS:181045_AT
tcgagacaagcaccgactctttggagccaacgttccaagaaattgaagttgagcaacgtc
cagaaagtgttgaagacacatcactaactgagtatgaggtcattccacgcgtcatggagg
ccagcaccaccgactcgctagatggaactgcaactattgagaaggactctgtgctcgaag
gcgccagccaaggaattgaatcaactcaatctacacatggactcctctccggtgacacaa
tgggaacagtggtcactgatgatgatcgagattctttggatggagaaatgtcgagcatgc
ttcaatcctatccaactacacttaccacattccaaacaacagttgtcggaccagatggct
ctcttcagaccatttcaagacgtgttgagacaaaggtcaccgacccattagtgtcccacg
ttacatttactggaacagaaagccaagaacggcttgaccaactaccggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAGACAAGCACCGACTCTTTGGA 592 601 14966 Antisense
CACCACCGACTCGCTAGATGGAACT 573 197 15090 Antisense
GAGAAGGACTCTGTGCTCGAAGGCG 303 391 15124 Antisense
AACTCAATCTACACATGGACTCCTC 300 141 15168 Antisense
CTCCTCTCCGGTGACACAATGGGAA 378 235 15187 Antisense
TTCAATCCTATCCAACTACACTTAC 235 685 15266 Antisense
TACACTTACCACATTCCAAACAACA 210 639 15282 Antisense
ACAGTTGTCGGACCAGATGGCTCTC 685 107 15304 Antisense
AGATGGCTCTCTTCAGACCATTTCA 462 67 15318 Antisense
ACCCATTAGTGTCCCACGTTACATT 162 91 15368 Antisense
AGAACGGCTTGACCAACTACCGGAT 378 71 15411 Antisense
Sequence Source Affymetrix Proprietary Database