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[181044_s_at]

Description B0524.5 /REP_DB=WormBase Gene ID /WP=CE20467 /TR=Q9N5Z8 /GB=AAF39750.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5
(-1.9)
A 		3.5
(-3)
A 		9.4
(1.3)
A 		11.8
(3)
A 		8
B 5
(3)
A 		2.5
(-3)
A 		4.4
(1.6)
A 		4.1
(0.8)
A 		3
C 2.7
(-3)
A 		6.2
(-0.2)
A 		4.9
(-1.2)
A 		10.2
(3)
A 		8
avr 4.2
(-2.9) 		4.1
(-3) 		6.2
(-0.3) 		8.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.8
(-2.8)
A 		4.2
(-2.3)
A 		2.2
(-3)
A 		4.5
(-2.2)
A 		13.7
(1.2)
A 		18.5
(3)
A 		16
B 3.1
(-2.9)
A 		5.8
(-1.2)
A 		3.4
(-2.7)
A 		2.9
(-3)
A 		11.6
(2.3)
A 		12.8
(3)
A 		10
C 4.4
(-1.6)
A 		5.6
(-0.8)
A 		4.6
(-1.5)
A 		2.4
(-3)
A 		3
(-2.6)
A 		11.2
(3)
A 		9
avr 3.4
(-2.9) 		5.2
(-2) 		3.4
(-2.9) 		3.3
(-3) 		9.4
(0.4) 		14.2
(3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.8
(0.8)
A 		0.8
(-3)
A 		2.4
(3)
A 		1.7
(0.4)
A 		2
B 1.6
(3)
A 		0.6
(-3)
A 		1
(-0.6)
A 		0.9
(-1.2)
A 		1
C 0.9
(-3)
A 		1.8
(3)
A 		1.7
(2.3)
A 		1.7
(2.3)
A 		1
avr 1.4
(-0) 		1.1
(-3) 		1.7
(3) 		1.4
(-0) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.5
(-1.5)
A 		0.5
(-3)
A 		1.1
(-2.1)
A 		4.1
(2.4)
A 		4.5
(3)
A 		4
B 1.1
(-2.6)
A 		1.9
(-1.4)
A 		0.8
(-3)
A 		0.8
(-3)
A 		4.7
(2.9)
A 		4.8
(3)
A 		4
C 1.6
(-1)
A 		1.7
(-0.8)
A 		1.2
(-1.7)
A 		0.5
(-3)
A 		1
(-2.1)
A 		3.8
(3)
A 		3
avr 1.1
(-2.5) 		1.7
(-1.5) 		0.8
(-3) 		0.8
(-3) 		3.3
(1.2) 		4.4
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181044_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8245
Sequence Type Exemplar sequence
Representative Public ID B0524.5 NCBI
Target Description B0524.5 /REP_DB=WormBase Gene ID /WP=CE20467 /TR=Q9N5Z8 /GB=AAF39750.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065072(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065072 NCBI Caenorhabditis elegans B0524.5 (B0524.5) mRNA, complete cds. 11/11 None
SNAP00000041792 ENSEMBL cdna:SNAP chromosome:CEL140:III:1891395:1915794:-1 11/11 None
GENEFINDER00000041799 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1891395:1893544:-1 11/11 None
B0524.5 ENSEMBL cdna:known chromosome:CEL140:III:1891267:1893831:-1 gene:B0524.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1891266-1893831(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0524.5
Entrez Gene 175333 Entrez gene
SwissProt Q9N5Z8 EMBL-EBI
WormBase CE20467 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39745 Hypothetical protein B0524.6 [Caenorhabditis elegans] ref|NP_497475.1| B0524.6 [Caenorhabditis elegans] 1.0E-124
blast AAF39750 Hypothetical protein B0524.5 [Caenorhabditis elegans] ref|NP_497473.1| B0524.5 [Caenorhabditis elegans] 1.0E-64
blast AAF39750 Hypothetical protein B0524.5 [Caenorhabditis elegans] ref|NP_497473.1| B0524.5 [Caenorhabditis elegans] 8.0E-49
blast CAE66467 Hypothetical protein CBG11744 [Caenorhabditis briggsae] 3.0E-33
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000041792 1 323-345
Sequence
Target Sequence 
>C. ELEGANS:181044_S_AT
ataattactggattcgcggctgcaacattagccctttcaacgtgtaacctgaaaaaggtc
cgaaaaccacctccagcgacacctgcaaagcctccagctccccagaaaactctaaaagtg
gctccgcgagcagcacctccaaggaagaaaaaggaaatttttctcgaagagcacacacct
ccctcgacggatactgacgaagtttcgacaattcccccggccgagcagatacgaattgtg
gaaaatcacaggagacgaattggtgtcagacctcgagccggaaatcgtgtctataagaaa
acgccgagctctgaattagtgaaagtggaaaacaaaaagtctgttgaaaagaattgcaag
gtggtcaagacagagagtggagaggctgaagcttgtgagaagaaggaggacaagaggaac
gtcgagaagaacaagaaaaaagaaaaggagagcaaggaaaaatcgaaaaattgctacgaa
aagaaggagctcaagaaaaacggttctgagtcatatgcctata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAATTACTGGATTCGCGGCTGCAA 498 25 28 Antisense
TTCGCGGCTGCAACATTAGCCCTTT 398 697 40 Antisense
TTAGCCCTTTCAACGTGTAACCTGA 335 681 55 Antisense
TCCAGCTCCCCAGAAAACTCTAAAA 426 587 120 Antisense
ACTCTAAAAGTGGCTCCGCGAGCAG 588 99 136 Antisense
TTTTTCTCGAAGAGCACACACCTCC 602 673 185 Antisense
CCTCCCTCGACGGATACTGACGAAG 350 267 205 Antisense
CCCCGGCCGAGCAGATACGAATTGT 351 261 242 Antisense
GACCTCGAGCCGGAAATCGTGTCTA 441 381 296 Antisense
GAAAACGCCGAGCTCTGAATTAGTG 29 355 324 Antisense
AACGGTTCTGAGTCATATGCCTATA 668 143 526 Antisense
Sequence Source Affymetrix Proprietary Database