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[181043_s_at] --- /// --- /// --- /// --- /// ---

Description K09F6.2 /REP_DB=WormBase Gene ID /WP=CE12026 /TR=O16730 /GB=AAB66193.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 3.3
(-2.8)
A 		2
(-3)
A 		6
(-2.4)
A 		45.4
(3)
A 		43
B 21.9
(0.9)
A 		31.4
(3)
A 		15.2
(-0.6)
A 		4.7
(-3)
A 		27
C 10
(-2.4)
A 		2.2
(-3)
A 		2.3
(-3)
A 		80
(3)
M 		78
avr 11.7
(-2.3) 		11.9
(-2.3) 		7.8
(-3) 		43.4
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 2.5
(-2.7)
A 		3.2
(-2.5)
A 		4.3
(-2.3)
A 		25.8
(3)
A 		18.1
(1.1)
A 		1.3
(-3)
A 		25
B 3.1
(-2.6)
A 		1.9
(-3)
A 		21.2
(3)
A 		2.1
(-2.9)
A 		11.8
(0.1)
A 		2.6
(-2.8)
A 		19
C 2
(-1.8)
A 		1.7
(-2.4)
A 		2.6
(-0.7)
A 		4.5
(3)
A 		1.4
(-3)
A 		1.8
(-2.2)
A 		3
avr 2.5
(-2.6) 		2.3
(-2.7) 		9.4
(2.1) 		10.8
(3) 		10.4
(2.7) 		1.9
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.2
(-2.2)
A 		0.4
(-3)
A 		1.6
(-1.8)
A 		6.6
(3)
A 		6
B 7
(2.3)
A 		7.8
(3)
A 		3.5
(-0.8)
A 		1
(-3)
A 		7
C 3.3
(-1.7)
A 		0.6
(-3)
A 		0.8
(-2.9)
A 		13.5
(3)
M 		13
avr 3.8
(-0.8) 		2.9
(-1.9) 		2
(-3) 		7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.5
(-2.8)
A 		1.1
(-2.2)
A 		0.9
(-2.4)
A 		6.5
(3)
A 		5.5
(2)
A 		0.3
(-3)
A 		6
B 1.1
(-2.3)
A 		0.6
(-3)
A 		5.1
(3)
A 		0.6
(-3)
A 		4.8
(2.6)
A 		1
(-2.5)
A 		5
C 0.7
(-0)
A 		0.5
(-3)
A 		0.6
(-1.5)
A 		0.9
(3)
A 		0.5
(-3)
A 		0.6
(-1.5)
A 		0
avr 0.8
(-2.6) 		0.7
(-2.8) 		2.2
(0.2) 		2.7
(1.2) 		3.6
(3) 		0.6
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181043_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5537
Sequence Type Exemplar sequence
Representative Public ID K09F6.2 NCBI
Target Description K09F6.2 /REP_DB=WormBase Gene ID /WP=CE12026 /TR=O16730 /GB=AAB66193.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070919(11), NM_061506(11), NM_061822(11), NM_071521(11), NM_064648(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070919 NCBI Caenorhabditis elegans R09E12.6 (R09E12.6) mRNA, complete cds. 11/11 A 
NM_061506 NCBI Caenorhabditis elegans K02E7.3 (K02E7.3) mRNA, complete cds. 11/11 A 
NM_061822 NCBI Caenorhabditis elegans K09F6.2 (K09F6.2) mRNA, complete cds. 11/11 None
NM_071521 NCBI Caenorhabditis elegans C17B7.7 (C17B7.7) mRNA, complete cds. 11/11 A 
NM_064648 NCBI Caenorhabditis elegans K02B7.1 (K02B7.1) mRNA, complete cds. 11/11 A 
SNAP00000001042 ENSEMBL cdna:SNAP chromosome:CEL140:II:14688052:14690943:1 11/11 None
GENEFINDER00000001049 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14688052:14690943:1 11/11 None
SNAP00000009216 ENSEMBL cdna:SNAP chromosome:CEL140:II:2265124:2268517:1 11/11 None
GENEFINDER00000009242 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2266595:2271224:1 11/11 None
SNAP00000023030 ENSEMBL cdna:SNAP chromosome:CEL140:II:1076368:1079259:1 11/11 None
GENEFINDER00000023036 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1076368:1079259:1 11/11 None
SNAP00000014998 ENSEMBL cdna:SNAP chromosome:CEL140:IV:702240:705131:1 11/11 None
GENEFINDER00000015021 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:702240:705131:1 11/11 None
SNAP00000041678 ENSEMBL cdna:SNAP chromosome:CEL140:IV:508022:510913:1 11/11 None
GENEFINDER00000041689 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:508022:510913:1 11/11 None
SNAP00000015610 ENSEMBL cdna:SNAP chromosome:CEL140:V:764862:768840:1 11/11 None
GENEFINDER00000015616 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:764862:768840:1 11/11 None
SNAP00000020304 ENSEMBL cdna:SNAP chromosome:CEL140:V:3325278:3328169:1 11/11 None
GENEFINDER00000020326 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3325278:3328169:1 11/11 None
K02E7.3 ENSEMBL cdna:known chromosome:CEL140:II:1076368:1079259:1 gene:K02E7.3 11/11 A 
K09F6.2 ENSEMBL cdna:known chromosome:CEL140:II:2267064:2270354:1 gene:K09F6.2 11/11 None
K02B7.1 ENSEMBL cdna:known chromosome:CEL140:II:14688052:14690943:1 gene:K02B7.1 11/11 A 
R09E12.6 ENSEMBL cdna:known chromosome:CEL140:V:765949:768840:1 gene:R09E12.6 11/11 A 
C17B7.7 ENSEMBL cdna:known chromosome:CEL140:V:3325278:3330250:1 gene:C17B7.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title




Ensembl K02E7.3
K09F6.2
K02B7.1
R09E12.6
C17B7.7
Entrez Gene 178765 Entrez gene
186866 Entrez gene
186887 Entrez gene
187231 Entrez gene
187748 Entrez gene
SwissProt O45152 EMBL-EBI
O45635 EMBL-EBI
O17258 EMBL-EBI
O16730 EMBL-EBI
O16256 EMBL-EBI
WormBase CE16855 Wormbase
CE16203 Wormbase
CE11626 Wormbase
CE12026 Wormbase
CE12652 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24174 Hypothetical protein R09E12.6 [Caenorhabditis elegans] ref|NP_503320.1| R09E12.6 [Caenorhabditis elegans] 0.0
blast AAB71023 Hypothetical protein K02E7.3 [Caenorhabditis elegans] ref|NP_493907.1| K02E7.3 [Caenorhabditis elegans] 0.0
blast ABA03110 Hypothetical protein W03G1.4 [Caenorhabditis elegans] pir||C88628 protein W03G1.4 [imported] - Caenorhabditis elegans 0.0
blast AAB66193 Hypothetical protein K09F6.2 [Caenorhabditis elegans] ref|NP_494223.1| K09F6.2 [Caenorhabditis elegans] 0.0
blast ABA03108 Hypothetical protein Y55F3C.6 [Caenorhabditis elegans] 0.0
blast AAC04401 Hypothetical protein C17B7.7 [Caenorhabditis elegans] ref|NP_503922.1| C17B7.7 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.9E-39
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 2.9E-111
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Pfam IPR009667 EMBL-EBI Protein of unknown function DUF1258 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494223.1 1 474-496
K09F6.2 1 474-496
SNAP00000015610 4 5-27,40-59,87-109,118-135
GENEFINDER00000015616 4 5-27,40-59,87-109,118-135
Sequence
Target Sequence 
>C. ELEGANS:181043_S_AT
ggccctcattttagcagcgttattcatcgggttcaaaaatccgacaacgaaaattcatga
tagacttacacaatggattctgctccaaatggacgaacatgtcttcttctcagagggagt
ggcctggaaagcggatctcacgtgtgccaatcatgacgatccagcacgacgaatcgtata
caatcagtgtggactccgatcatcaggttcttgcaacttttgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCCTCATTTTAGCAGCGTTATTC 124 543 879 Antisense
GCAGCGTTATTCATCGGGTTCAAAA 330 299 892 Antisense
AGACTTACACAATGGATTCTGCTCC 605 71 940 Antisense
ATGGACGAACATGTCTTCTTCTCAG 146 51 967 Antisense
GTCTTCTTCTCAGAGGGAGTGGCCT 260 469 979 Antisense
GAGTGGCCTGGAAAGCGGATCTCAC 22 403 995 Antisense
GGATCTCACGTGTGCCAATCATGAC 690 511 1011 Antisense
CAATCATGACGATCCAGCACGACGA 505 183 1026 Antisense
ACGACGAATCGTATACAATCAGTGT 273 93 1044 Antisense
ATCAGTGTGGACTCCGATCATCAGG 244 29 1061 Antisense
TCATCAGGTTCTTGCAACTTTTGCT 604 619 1078 Antisense
Sequence Source Affymetrix Proprietary Database