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[181042_at]

Description ZK1037.8 /REP_DB=WormBase Gene ID /WP=CE16760 /TR=O45990 /GB=CAB03507.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 02      6grp_cgc > 29      6grp_cgc_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 5
(-3)
A 		8.9
(-2.5)
A 		7.3
(-2.7)
A 		56.6
(3)
A 		52
B 12
(-2.7)
A 		9.7
(-3)
A 		10.3
(-2.9)
A 		49.4
(3)
A 		40
C 8
(-2.8)
A 		6.3
(-3)
A 		8
(-2.8)
A 		66.9
(3)
A 		61
avr 8.3
(-3) 		8.3
(-3) 		8.5
(-3) 		57.6
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 6.2
(-2.8)
A 		4.7
(-3)
A 		5.7
(-2.9)
A 		5.4
(-2.9)
A 		20
(-0.8)
A 		46.1
(3)
A 		41
B 4.8
(-2.5)
A 		26.1
(3)
A 		2.7
(-3)
A 		7.9
(-1.7)
A 		7.5
(-1.8)
A 		6.1
(-2.1)
A 		23
C 6.2
(0.1)
A 		9.1
(3)
A 		3
(-3)
A 		3.4
(-2.6)
A 		4.8
(-1.2)
A 		4.3
(-1.7)
A 		6
avr 5.7
(-2.2) 		13.3
(0.8) 		3.8
(-3) 		5.6
(-2.3) 		10.8
(-0.2) 		18.8
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.8
(-3)
A 		1.9
(-2.9)
A 		1.9
(-2.9)
A 		8.3
(3)
A 		7
B 3.8
(-2)
A 		2.4
(-3)
A 		2.4
(-3)
A 		10.5
(3)
A 		8
C 2.7
(-2.4)
A 		1.8
(-3)
A 		2.8
(-2.4)
A 		11.3
(3)
A 		10
avr 2.8
(-2.4) 		2
(-3) 		2.4
(-2.7) 		10
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.7
(-2.6)
A 		1.2
(-2.9)
A 		1.4
(-2.8)
A 		6
(-0.1)
A 		11.2
(3)
A 		10
B 1.7
(-2.3)
A 		8.7
(3)
A 		0.7
(-3)
A 		2.1
(-2)
A 		3.1
(-1.2)
A 		2.3
(-1.8)
A 		8
C 2.3
(1.6)
A 		2.8
(3)
A 		0.8
(-2.7)
A 		0.7
(-3)
A 		1.6
(-0.4)
A 		1.4
(-1)
A 		2
avr 1.7
(-1.8) 		4.4
(2.1) 		0.9
(-3) 		1.4
(-2.3) 		3.6
(1) 		5
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181042_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13587
Sequence Type Exemplar sequence
Representative Public ID ZK1037.8 NCBI
Target Description ZK1037.8 /REP_DB=WormBase Gene ID /WP=CE16760 /TR=O45990 /GB=CAB03507.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074400(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074400 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-295) (srh-295) mRNA, complete cds. 11/11 None
GENEFINDER00000019047 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15331242:15335558:1 11/11 None
ZK1037.8 ENSEMBL cdna:known chromosome:CEL140:V:15333200:15335360:1 gene:ZK1037.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15333199-15335360(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-295
Ensembl ZK1037.8
Entrez Gene 191502 Entrez gene
SwissProt O45990 EMBL-EBI
WormBase CE16760 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03507 Hypothetical protein ZK1037.8 [Caenorhabditis elegans] ref|NP_506801.1| Serpentine Receptor, class H family member (srh-295) [Caenorhabditis elegans] 0.0
blast CAB03507 Hypothetical protein ZK1037.8 [Caenorhabditis elegans] ref|NP_506801.1| Serpentine Receptor, class H family member (srh-295) [Caenorhabditis elegans] 1.0E-141
blast CAB03506 Hypothetical protein ZK1037.7 [Caenorhabditis elegans] ref|NP_506800.1| Serpentine Receptor, class W family member (srw-70) [Caenorhabditis elegans] 1.0E-137
blast AAK72055 Serpentine receptor, class h protein 297 [Caenorhabditis elegans] ref|NP_494484.3| Serpentine Receptor, class H family member (srh-297) [Caenorhabditis elegans] 1.0E-104
blast CAA19566 Hypothetical protein Y94A7B.4 [Caenorhabditis elegans] ref|NP_507497.1| Serpentine Receptor, class H family member (srh-296) [Caenorhabditis elegans] 1.0E-103
blast AAK72055 Serpentine receptor, class h protein 297 [Caenorhabditis elegans] ref|NP_494484.3| Serpentine Receptor, class H family member (srh-297) [Caenorhabditis elegans] 3.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.8E-101
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506801.1 7 10-32,59-81,96-118,130-152,192-214,238-260,275-293
ZK1037.8 7 10-32,59-81,96-118,130-152,192-214,238-260,275-293
GENEFINDER00000019047 12 86-103,108-130,137-159,211-233,254-276,296-315,328-350,365-387,399-421,461-483,507-529,544-562
Sequence
Target Sequence 
>C. ELEGANS:181042_AT
tttggaaatatctccgttacccatttttaatactcaacttctttattggactgatcacat
ttgttccaacttttttaaccgttcctcaagaccatgagaatgcaagacgtcaactattca
atttatacccaaacgcctgtgaatacgtccccgacaaatcgctaattttcgtgataaatt
tttatgaaaaaggttgggtaaaacttgcaggaaaccttacgacatacgtgctatttgtgg
agattatagttttcgttgtggcgctcaaagtgaagttgaaccgaatttcaaaggcttcaa
tgtcgagtgtcactcttcgaatgcagaagaaattcattaaagctttgaatctacagatca
gtattcctgttctaatatttttcgcaccatcaattgctggccttgtcccaggcggtgaac
agaaaacggaaaatcaaatgaagaataatttactgatcatcttcacgtcatttcacggag
caatatctacaattctaatgatttatctgcaagaaccctatagacagttttttctagcgc
gctttgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGGAAATATCTCCGTTACCCATT 399 655 383 Antisense
GACTGATCACATTTGTTCCAACTTT 291 375 431 Antisense
TTTTAACCGTTCCTCAAGACCATGA 575 675 455 Antisense
TTATACCCAAACGCCTGTGAATACG 359 673 505 Antisense
AATACGTCCCCGACAAATCGCTAAT 369 173 524 Antisense
TAGTTTTCGTTGTGGCGCTCAAAGT 124 551 629 Antisense
AGGCTTCAATGTCGAGTGTCACTCT 157 53 674 Antisense
TTCCTGTTCTAATATTTTTCGCACC 219 695 746 Antisense
TTTTCGCACCATCAATTGCTGGCCT 169 677 761 Antisense
CTGATCATCTTCACGTCATTTCACG 673 237 835 Antisense
ACAGTTTTTTCTAGCGCGCTTTGTG 284 107 906 Antisense
Sequence Source Affymetrix Proprietary Database