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[181041_at]

Description F09F9.3 /REP_DB=WormBase Gene ID /WP=CE04348 /TR=Q19283 /GB=AAA81763.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 375
1 2 3 4 range
A 55.3
(-3)
A 		62.4
(-2.9)
A 		72.3
(-2.7)
P 		385.4
(3)
P 		330
B 41.1
(-3)
A 		80
(-2.2)
A 		48.6
(-2.8)
M 		321.4
(3)
P 		280
C 39.7
(-2.9)
A 		61.3
(-2.5)
A 		32.9
(-3)
A 		407.7
(3)
P 		375
avr 45.4
(-3) 		67.9
(-2.6) 		51.3
(-2.9) 		371.5
(3) 		326

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 69.8
(-2.4)
P 		53.2
(-3)
A 		81.8
(-2)
A 		104.6
(-1.2)
M 		89.4
(-1.8)
M 		227.2
(3)
P 		174
B 82.3
(-1.7)
P 		103.7
(-1.1)
P 		57
(-2.4)
A 		37.5
(-3)
A 		91.8
(-1.5)
P 		247.9
(3)
P 		210
C 96.4
(-1)
A 		99.9
(-0.9)
A 		20.5
(-3)
A 		106.1
(-0.7)
P 		50.5
(-2.2)
A 		246
(3)
P 		226
avr 82.8
(-2) 		85.6
(-2) 		53.1
(-3) 		82.7
(-2.1) 		77.2
(-2.2) 		240.4
(3) 		187
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 20.1
(-2.1)
A 		13.5
(-3)
A 		18.9
(-2.2)
P 		56.4
(3)
P 		43
B 13.1
(-2.8)
A 		19.8
(-2.1)
A 		11.3
(-3)
M 		68.5
(3)
P 		57
C 13.1
(-2.8)
A 		17.6
(-2.4)
A 		11.5
(-3)
A 		68.7
(3)
P 		57
avr 15.4
(-2.8) 		17
(-2.6) 		13.9
(-3) 		64.5
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 12.9
(-3)
P 		18.9
(-2.2)
A 		17.8
(-2.3)
A 		26.5
(-1.1)
M 		27
(-1)
M 		55.3
(3)
P 		42
B 28.6
(-1.6)
P 		34.5
(-1.2)
P 		13.8
(-2.7)
A 		9.9
(-3)
A 		37.3
(-1)
P 		92.4
(3)
P 		83
C 35.7
(-0.6)
A 		30.5
(-1)
A 		5.2
(-3)
A 		21.3
(-1.7)
P 		16.3
(-2.1)
A 		82.4
(3)
P 		77
avr 25.7
(-1.8) 		28
(-1.5) 		12.3
(-3) 		19.2
(-2.4) 		26.9
(-1.6) 		76.7
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181041_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16485
Sequence Type Exemplar sequence
Representative Public ID F09F9.3 NCBI
Target Description F09F9.3 /REP_DB=WormBase Gene ID /WP=CE04348 /TR=Q19283 /GB=AAA81763.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076299(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076299 NCBI Caenorhabditis elegans F09F9.3 (F09F9.3) mRNA, complete cds. 11/11 None
SNAP00000015418 ENSEMBL cdna:SNAP chromosome:CEL140:X:4119626:4120990:-1 11/11 None
GENEFINDER00000015421 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4119626:4120990:-1 11/11 None
F09F9.3 ENSEMBL cdna:known chromosome:CEL140:X:4119626:4120990:-1 gene:F09F9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4119626-4120991(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09F9.3
Entrez Gene 184264 Entrez gene
SwissProt Q19283 EMBL-EBI
WormBase CE04348 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81763 Hypothetical protein F09F9.3 [Caenorhabditis elegans] ref|NP_508700.1| F09F9.3 [Caenorhabditis elegans] 2.0E-64
blast CAE68525 Hypothetical protein CBG14347 [Caenorhabditis briggsae] 6.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508700.1 1 7-29
F09F9.3 1 7-29
SNAP00000015418 1 7-29
GENEFINDER00000015421 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:181041_AT
acttttcttctgcacttttcgtgataattgctatgtttttattcaatttcatatctggtg
ttccaataattatgtcaaatccacacgaaacacctcatctagttactgaaaaaataagta
aatcatggactgatgaacggctctgtgtgctgaaaatgggctcagcctgtccgcagggat
tcactgaggatcagctcaagctttctgttcagactgatgtaaatccgaaggactatggtc
acaatggagaacagctgatcagaatgggacaagccggtgaaacatcgttaactcggaatg
tgtacgatgcactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTTTCTTCTGCACTTTTCGTGAT 146 103 26 Antisense
TTCAATTTCATATCTGGTGTTCCAA 492 685 67 Antisense
ATGTCAAATCCACACGAAACACCTC 35 47 97 Antisense
GAAACACCTCATCTAGTTACTGAAA 549 355 112 Antisense
TGGACTGATGAACGGCTCTGTGTGC 148 549 151 Antisense
GAACGGCTCTGTGTGCTGAAAATGG 56 349 160 Antisense
TGAAAATGGGCTCAGCCTGTCCGCA 49 573 176 Antisense
CCTGTCCGCAGGGATTCACTGAGGA 120 267 191 Antisense
ATCAGCTCAAGCTTTCTGTTCAGAC 333 29 215 Antisense
GGGACAAGCCGGTGAAACATCGTTA 568 601 291 Antisense
AACTCGGAATGTGTACGATGCACTT 287 141 315 Antisense
Sequence Source Affymetrix Proprietary Database