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[181040_at]

Description F54C1.6 /REP_DB=WormBase Gene ID /WP=CE11050 /TR=P91327 /GB=AAK21394.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 10
(-2.8)
A 		9.9
(-2.8)
A 		7.6
(-3)
A 		65.2
(3)
A 		58
B 12.7
(3)
A 		10.4
(0.7)
A 		6.8
(-3)
A 		11.6
(1.9)
A 		6
C 14.8
(0.8)
A 		9.4
(-1.4)
A 		5.2
(-3)
A 		20.5
(3)
A 		15
avr 12.5
(-1.6) 		9.9
(-2.2) 		6.5
(-3) 		32.4
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 4.9
(-3)
A 		8.9
(-0.1)
A 		12.1
(2.3)
A 		13.1
(3)
A 		10.4
(1)
A 		10.2
(0.9)
A 		8
B 5.5
(1.1)
A 		5.3
(0.5)
A 		4.2
(-3)
A 		4.9
(-0.8)
A 		6.1
(3)
A 		4.7
(-1.4)
A 		2
C 6.6
(-2)
A 		6.6
(-2)
A 		5.8
(-2.7)
A 		5.6
(-2.9)
A 		11.9
(3)
A 		5.5
(-3)
A 		6
avr 5.7
(-3) 		6.9
(-1.1) 		7.4
(-0.3) 		7.9
(0.5) 		9.5
(3) 		6.8
(-1.3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.6
(-1.7)
A 		2.1
(-2.9)
A 		2
(-3)
A 		9.6
(3)
A 		8
B 4.1
(3)
A 		2.6
(-0.6)
A 		1.6
(-3)
A 		2.5
(-0.8)
A 		3
C 4.9
(3)
A 		2.7
(-1.3)
A 		1.8
(-3)
A 		3.5
(0.3)
A 		3
avr 4.2
(1.2) 		2.5
(-1.8) 		1.8
(-3) 		5.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.9
(-3)
A 		3.1
(2.5)
A 		2.6
(1.3)
A 		3.3
(3)
A 		3.1
(2.5)
A 		2.5
(1)
A 		2
B 1.9
(0.6)
A 		1.8
(0.2)
A 		1
(-3)
A 		1.3
(-1.8)
A 		2.5
(3)
A 		1.7
(-0.2)
A 		2
C 2.4
(-0.1)
A 		2
(-1)
A 		1.5
(-2.1)
A 		1.1
(-3)
A 		3.8
(3)
A 		1.8
(-1.4)
A 		3
avr 1.7
(-3) 		2.3
(-0.4) 		1.7
(-3) 		1.9
(-2.1) 		3.1
(3) 		2
(-1.7) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181040_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.988
Sequence Type Exemplar sequence
Representative Public ID F54C1.6 NCBI
Target Description F54C1.6 /REP_DB=WormBase Gene ID /WP=CE11050 /TR=P91327 /GB=AAK21394.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059099(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059099 NCBI Caenorhabditis elegans F54C1.6 (F54C1.6) mRNA, complete cds. 11/11 None
GENEFINDER00000015280 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5014351:5016221:-1 11/11 None
F54C1.6 ENSEMBL cdna:known chromosome:CEL140:I:5014351:5016260:-1 gene:F54C1.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015274 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5014350-5016260(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F54C1.6
Entrez Gene 186219 Entrez gene
SwissProt P91327 EMBL-EBI
WormBase CE11050 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21394 Hypothetical protein F54C1.6 [Caenorhabditis elegans] ref|NP_491500.1| F54C1.6 [Caenorhabditis elegans] 1.0E-138
blast AAK21394 Hypothetical protein F54C1.6 [Caenorhabditis elegans] ref|NP_491500.1| F54C1.6 [Caenorhabditis elegans] 1.0E-131
blast CAE65695 Hypothetical protein CBG10770 [Caenorhabditis briggsae] 2.0E-83
blast CAE65695 Hypothetical protein CBG10770 [Caenorhabditis briggsae] 7.0E-77
Sequence
Target Sequence 
>C. ELEGANS:181040_AT
ccgaccgacccaggacctgatagataagtcaactctattgaaggacgagaaacgcagaca
gctagacgatgcgtggatgcttctcgtttttcgtggcagggaagcccagagtagagtggc
agattgtgttaaattgtttaagacacagtactcgttacataaaagagacatctattggac
tgataatgagcaacaagctcttcatgaagaaaatctttggttcaaaaatgacgatgcagt
ggtgagcacttcgaacggggaggtagcagtggcagccgtggtgcaggcggcagatgtagt
acatcatcagaatggagctcctccaattgaaccatctgaaacaagtcttaaagttgaacc
tgacaatgagattgtgccagaagttaactctgaattttcaacagaaggacctcatgcttc
cgtgaactcaagtcaaattccttctccagttccaccagaagtacacacacctcatccaac
gcatgatgtcaaatccaaagatgagccgagcgcagaagtgattagcaacactgctgatat
tcttgaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGACCGACCCAGGACCTGATAGAT 291 257 240 Antisense
GACAGCTAGACGATGCGTGGATGCT 682 367 296 Antisense
TCTCGTTTTTCGTGGCAGGGAAGCC 175 609 321 Antisense
GTGGTGAGCACTTCGAACGGGGAGG 64 489 478 Antisense
TAGCAGTGGCAGCCGTGGTGCAGGC 11 651 503 Antisense
ACATCATCAGAATGGAGCTCCTCCA 658 105 540 Antisense
GCTCCTCCAATTGAACCATCTGAAA 480 293 556 Antisense
CAGAAGGACCTCATGCTTCCGTGAA 15 205 641 Antisense
AGTTCCACCAGAAGTACACACACCT 388 65 687 Antisense
CACACCTCATCCAACGCATGATGTC 18 195 705 Antisense
GCAACACTGCTGATATTCTTGAACC 119 319 764 Antisense
Sequence Source Affymetrix Proprietary Database