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[181039_at]

Description T16G12.6 /REP_DB=WormBase Gene ID /WP=CE00584 /TR=Q22529 /GB=CAA82969.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 42      4grp_high_8_8 > 49      6grp_highest_nonorm > 72      6grp_total > 46      4grp_total > 62      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 257
1 2 3 4 range
A 480
(3)
P 		341.3
(-0.9)
P 		408.1
(1)
P 		266
(-3)
P 		214
B 523.3
(3)
P 		383.2
(-1.2)
P 		412.9
(-0.3)
P 		325.2
(-3)
P 		198
C 477.2
(3)
P 		373.2
(-0.9)
P 		396.1
(-0.1)
P 		319.1
(-3)
P 		158
avr 493.5
(3) 		365.9
(-1) 		405.7
(0.2) 		303.4
(-3) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 396.7
(-2.2)
P 		505.1
(3)
P 		457
(0.7)
P 		405.3
(-1.8)
P 		381.2
(-3)
P 		468.5
(1.2)
P 		124
B 488.2
(2.2)
P 		507.6
(3)
P 		434
(-0.1)
P 		424
(-0.5)
P 		364.8
(-3)
P 		470.8
(1.5)
P 		143
C 416.8
(0.1)
P 		503.5
(2.7)
P 		443.1
(0.9)
P 		465.1
(1.5)
P 		314.3
(-3)
P 		513.4
(3)
P 		199
avr 433.9
(0.2) 		505.4
(3) 		444.7
(0.6) 		431.5
(0.1) 		353.4
(-3) 		484.2
(2.2) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 174.8
(3)
P 		74.1
(-1.4)
P 		106.7
(-0)
P 		38.9
(-3)
P 		136
B 166.9
(3)
P 		94.6
(-1.4)
P 		95.7
(-1.4)
P 		69.3
(-3)
P 		98
C 158
(3)
P 		107.3
(0.1)
P 		138.1
(1.9)
P 		53.8
(-3)
P 		104
avr 166.6
(3) 		92
(-1) 		113.5
(0.2) 		54
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 73.1
(-3)
P 		179.6
(3)
P 		99.5
(-1.5)
P 		102.8
(-1.3)
P 		115
(-0.6)
P 		114.1
(-0.7)
P 		107
B 169.9
(2.5)
P 		168.9
(2.4)
P 		105.4
(-3)
P 		112.3
(-2.4)
P 		148.2
(0.7)
P 		175.6
(3)
P 		70
C 154.5
(1.7)
P 		153.6
(1.6)
P 		112.8
(-1.5)
P 		93.5
(-3)
P 		101.7
(-2.4)
P 		171.9
(3)
P 		78
avr 132.5
(-0.2) 		167.4
(3) 		105.9
(-2.7) 		102.9
(-3) 		121.6
(-1.3) 		153.9
(1.7) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181039_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7191
Sequence Type Exemplar sequence
Representative Public ID T16G12.6 NCBI
Target Description T16G12.6 /REP_DB=WormBase Gene ID /WP=CE00584 /TR=Q22529 /GB=CAA82969.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066834(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066834 NCBI Caenorhabditis elegans T16G12.6 (T16G12.6) mRNA, complete cds. 11/11 None
SNAP00000010172 ENSEMBL cdna:SNAP chromosome:CEL140:III:10069471:10075737:1 9/11 None
GENEFINDER00000010173 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10069471:10075737:1 11/11 None
T16G12.6 ENSEMBL cdna:known chromosome:CEL140:III:10069465:10075883:1 gene:T16G12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10069466-10075733(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T16G12.6
Entrez Gene 176420 Entrez gene
SwissProt Q22529 EMBL-EBI
WormBase CE00584 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82969 Hypothetical protein T16G12.6 [Caenorhabditis elegans] ref|NP_499235.1| T16G12.6 [Caenorhabditis elegans] 0.0
blast CAE65052 Hypothetical protein CBG09895 [Caenorhabditis briggsae] 0.0
blast CAH91686 hypothetical protein [Pongo pygmaeus] 4.0E-19
blast NP_446230 importin 13 [Rattus norvegicus] gb|AAF44721.1| late gestation lung 2 protein [Rattus norvegicus] sp|Q9JM04|IPO13_RAT Importin-13 (Imp13) (Late gestation lung 2 protein) 4.0E-19
Sequence
Target Sequence 
>C. ELEGANS:181039_AT
agttattgcggcttgtgcacttgcaaaatctacggttttgcaatgcggatcgctcgttgg
tgtggatatggcaaatgcatttgcacaatggattctggcgttcgaacaacatgtagagtc
gccacaagttgatgaatatctccagctgatctaccaagttgtgcggaaaaattggaaaat
gattagaaagttcccagatccatcgatggccgcatttcagtcttctcttaaaatttgtag
ttttataatcctcaactcgtctgttccaactgaagttcgaagtgcttctcagattcttgc
ggctcttgccacctatgccacttcccatgatgacgttgcaatgaaatcaacgttcgccga
gaatggtccaattttgattcgtgctgtatttcgaagagtacaaggagagctaatgcggcc
gactgttgaagcattggctgatattcttctcttttactttaaagagttcaccacagacac
aagaacactaataagtggagaaccatacgggacatcagcccttgtaacatccatgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTATTGCGGCTTGTGCACTTGCA 503 63 2184 Antisense
GCAATGCGGATCGCTCGTTGGTGTG 221 321 2223 Antisense
GAATATCTCCAGCTGATCTACCAAG 27 325 2317 Antisense
AAAGTTCCCAGATCCATCGATGGCC 317 123 2370 Antisense
TCAACTCGTCTGTTCCAACTGAAGT 120 631 2435 Antisense
CGAAGTGCTTCTCAGATTCTTGCGG 124 253 2461 Antisense
TGCCACTTCCCATGATGACGTTGCA 428 587 2499 Antisense
GAGCTAATGCGGCCGACTGTTGAAG 231 387 2590 Antisense
CATTGGCTGATATTCTTCTCTTTTA 544 217 2615 Antisense
GAACCATACGGGACATCAGCCCTTG 486 345 2683 Antisense
ATCAGCCCTTGTAACATCCATGTTT 359 29 2697 Antisense
Sequence Source Affymetrix Proprietary Database