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[181038_at]

Description C14B1.10 /REP_DB=WormBase Gene ID /WP=CE19696 /TR=Q9U3P9 /GB=CAB63431.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 27      6grp_total > 40      4grp_total > 37      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 117.4
(3)
P 		80.2
(-0.6)
M 		59.5
(-2.6)
P 		55.2
(-3)
P 		62
B 112.9
(3)
P 		103.9
(0.8)
P 		88
(-3)
P 		93
(-1.8)
P 		25
C 70.3
(-3)
P 		100.7
(0.4)
M 		88
(-1)
P 		124.7
(3)
P 		54
avr 100.2
(3) 		94.9
(1.5) 		78.5
(-3) 		91
(0.5) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 83.8
(2.4)
P 		84.3
(2.4)
P 		72.8
(1.4)
P 		91.3
(3)
A 		20.2
(-3)
A 		39.8
(-1.3)
P 		71
B 70.7
(-0.6)
P 		64.9
(-1.2)
P 		72.9
(-0.3)
P 		103
(3)
A 		49
(-3)
P 		49.5
(-2.9)
P 		54
C 63.3
(-0.9)
P 		88.6
(3)
P 		60.7
(-1.3)
A 		50
(-3)
A 		51.2
(-2.8)
A 		64.5
(-0.7)
P 		39
avr 72.6
(1.7) 		79.3
(2.7) 		68.8
(1.2) 		81.4
(3) 		40.1
(-3) 		51.3
(-1.4) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 42.8
(3)
P 		17.4
(-1.4)
M 		15.6
(-1.7)
P 		8.1
(-3)
P 		35
B 36
(3)
P 		25.7
(-0.8)
P 		20.4
(-2.8)
P 		19.8
(-3)
P 		16
C 23.3
(-1.6)
P 		28.9
(1.9)
M 		30.7
(3)
P 		21
(-3)
P 		10
avr 34
(3) 		24
(-0.4) 		22.2
(-1) 		16.3
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 15.5
(-0.6)
P 		30
(3)
P 		15.9
(-0.5)
P 		23.2
(1.3)
A 		6.1
(-3)
A 		9.7
(-2.1)
P 		24
B 24.6
(1.3)
P 		21.6
(-0.6)
P 		17.7
(-3)
P 		27.3
(3)
A 		19.9
(-1.6)
P 		18.5
(-2.5)
P 		10
C 23.5
(1.8)
P 		27
(3)
P 		15.5
(-1.1)
A 		10
(-3)
A 		16.6
(-0.7)
A 		21.6
(1.1)
P 		17
avr 21.2
(0.5) 		26.2
(3) 		16.4
(-1.9) 		20.2
(0) 		14.2
(-3) 		16.6
(-1.8) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181038_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6399
Sequence Type Exemplar sequence
Representative Public ID C14B1.10 NCBI
Target Description C14B1.10 /REP_DB=WormBase Gene ID /WP=CE19696 /TR=Q9U3P9 /GB=CAB63431.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065350(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065350 NCBI Caenorhabditis elegans C14B1.10 (C14B1.10) mRNA, complete cds. 11/11 None
GENEFINDER00000040972 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3705265:3712953:1 11/11 None
SNAP00000040962 ENSEMBL cdna:SNAP chromosome:CEL140:III:3709341:3712859:1 11/11 None
C14B1.10.1 ENSEMBL cdna:known chromosome:CEL140:III:3709308:3713019:1 gene:C14B1.10 11/11 None
C14B1.10.2 ENSEMBL cdna:known chromosome:CEL140:III:3709341:3713260:1 gene:C14B1.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3709368-3712859(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14B1.10
Entrez Gene 175476 Entrez gene
SwissProt Q9U3P9 EMBL-EBI
WormBase CE28888 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:260128_AT expressed protein at
CANINE:1603422_AT similar to CG17807-PA cfa
CANINE_2:CFAAFFX.22664.1.S1_AT similar to CG17807-PA cfa
CANINE_2:CFAAFFX.22670.1.S1_S_AT similar to CG17807-PA cfa
DROSOPHILA_2:1631099_AT dm
DROSGENOME1:141792_AT dm
CHICKEN:GGAAFFX.11006.1.S1_AT similar to hypothetical protein gga
CHICKEN:GGAAFFX.11006.3.S1_S_AT similar to hypothetical protein gga
U133_X3P:HS.212157.0.A1_3P_AT hypothetical protein BC015183 hs
HG-U133_PLUS_2:235713_AT hypothetical protein BC015183 hs
HG-U133B:235713_AT hypothetical protein BC015183 hs
HG-U95E:87116_AT hypothetical protein BC015183 hs
HU35KSUBA:R39398_S_AT Hypothetical protein BC015183 hs
U133_X3P:HS.91559.0.A1_3P_AT Hypothetical protein BC015183 hs
HG-U133_PLUS_2:235610_AT Hypothetical protein BC015183 hs
HG-U133B:235610_AT Hypothetical protein BC015183 hs
HG-U95C:54389_AT Hypothetical protein BC015183 hs
MG-U74BV2:109667_AT RIKEN cDNA 4930562C03 gene mm
MOE430B:1429521_AT RIKEN cDNA 4930562C03 gene mm
MOUSE430_2:1429521_AT RIKEN cDNA 4930562C03 gene mm
MOE430B:1453539_AT RIKEN cDNA 4930562C03 gene mm
MOUSE430_2:1453539_AT RIKEN cDNA 4930562C03 gene mm
YEAST_2:1776115_AT tRNA methyltransferase, catalyzes the esterification of modified uridine nucleotides in tRNAs, creating 5-methylcarbonylmethyluridine in tRNA(Arg3) and 5-methylcarbonylmethyl-2-thiouridine in tRNA(Glu); may have a role in stress response Sc
Protein Similarities
Method ID Description E-Value
blast CAB63431 Hypothetical protein C14B1.10 [Caenorhabditis elegans] ref|NP_497751.1| C14B1.10 [Caenorhabditis elegans] 0.0
blast CAA85487 Hypothetical protein C14B1.4 [Caenorhabditis elegans] ref|NP_497749.1| C14B1.4 [Caenorhabditis elegans] sp|Q17963|YKY4_CAEEL Hypothetical WD-repeat protein C14B1.4 in chromosome III 0.0
blast CAA85493 Hypothetical protein C14B1.5 [Caenorhabditis elegans] ref|NP_497750.1| C14B1.5 [Caenorhabditis elegans] sp|P49958|YKY5_CAEEL Hypothetical protein C14B1.5 in chromosome III 0.0
blast XP_395117 PREDICTED: similar to GA14676-PA [Apis mellifera] 2.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR002728 EMBL-EBI Diphthamide synthesis DPH2 protein 1.0E-126
Pfam IPR005123 EMBL-EBI 2OG-Fe(II) oxygenase superfamily 1.1E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.5E-12
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 7.2E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.8E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.7E-14
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.5E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.5E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.022
Pfam IPR005123 EMBL-EBI 2OG-Fe(II) oxygenase superfamily 1.1E-10
Sequence
Target Sequence 
>C. ELEGANS:181038_AT
gggactttgcgatattgctcggaaaaaggattgccacgtggctcgctgtgatgctctagc
actcccgttccgttatgaatcagctgacgcggcgatttctattgctgtactccatcatat
tgcaacttttgaaagaagaaaacgacttattgaggagctcctgagagttgtaaagcctgg
aagtaagatctgtgttaccgtgtggtctatggatcagagtcaatcggagtatgcgaagat
gcgtggcaataaggatgacgtggcggcggctccagcggtgtcgtcagaagaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGACTTTGCGATATTGCTCGGAAA 366 495 1335 Antisense
AAAGGATTGCCACGTGGCTCGCTGT 633 121 1359 Antisense
ACTCCCGTTCCGTTATGAATCAGCT 496 99 1395 Antisense
TGAATCAGCTGACGCGGCGATTTCT 116 575 1410 Antisense
GACGCGGCGATTTCTATTGCTGTAC 483 381 1420 Antisense
TTCTATTGCTGTACTCCATCATATT 363 691 1431 Antisense
AAAACGACTTATTGAGGAGCTCCTG 356 131 1473 Antisense
GGAGCTCCTGAGAGTTGTAAAGCCT 604 519 1488 Antisense
AGATCTGTGTTACCGTGTGGTCTAT 394 67 1520 Antisense
AATAAGGATGACGTGGCGGCGGCTC 309 151 1582 Antisense
GCTCCAGCGGTGTCGTCAGAAGAGA 702 297 1603 Antisense
Sequence Source Affymetrix Proprietary Database