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[181037_at]

Description F44C4.4 /REP_DB=WormBase Gene ID /WP=CE28330 /TR=Q20388 /GB=AAA92326.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 68      4grp_highest_8_8 > 52      4grp_high_8_8 > 24      6grp_highest_nonorm > 73      6grp_total > 79      4grp_total > 39      6grp_highest_sub > Cu      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 363
1 2 3 4 range
A 618
(3)
P 		255.5
(-3)
P 		310.2
(-2.1)
P 		413
(-0.4)
P 		363
B 557.3
(3)
P 		318.6
(-2.5)
P 		299.2
(-3)
P 		354
(-1.7)
P 		258
C 612
(3)
P 		285.2
(-3)
P 		318.1
(-2.4)
P 		367
(-1.5)
P 		327
avr 595.8
(3) 		286.4
(-3) 		309.2
(-2.6) 		378
(-1.2) 		309

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 320
1 2 3 4 5 6 range
A 565
(1.2)
P 		488.1
(-0.7)
P 		433.2
(-2.1)
P 		396.8
(-3)
P 		637.4
(3)
P 		620.1
(2.6)
P 		241
B 495.7
(-2.1)
P 		625.5
(0.9)
P 		542.3
(-1)
P 		454.5
(-3)
P 		481
(-2.4)
P 		716.6
(3)
P 		262
C 504.3
(-1)
P 		601.9
(2)
P 		504.4
(-1)
P 		512.5
(-0.7)
P 		438.7
(-3)
P 		632.7
(3)
P 		194
avr 521.7
(-1) 		571.8
(0.5) 		493.3
(-1.8) 		454.6
(-3) 		519
(-1.1) 		656.5
(3) 		202
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 225
(3)
P 		55.5
(-3)
P 		81.1
(-2.1)
P 		60.5
(-2.8)
P 		170
B 177.7
(3)
P 		78.7
(-2.5)
P 		69.3
(-3)
P 		75.4
(-2.7)
P 		108
C 202.6
(3)
P 		82
(-2.1)
P 		110.9
(-0.9)
P 		61.9
(-3)
P 		141
avr 201.8
(3) 		72.1
(-2.7) 		87.1
(-2.1) 		65.9
(-3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 104.2
(-2.4)
P 		173.6
(1.9)
P 		94.3
(-3)
P 		100.6
(-2.6)
P 		192.3
(3)
P 		151
(0.5)
P 		98
B 172.5
(-0.9)
P 		208.2
(0.6)
P 		131.7
(-2.5)
P 		120.4
(-3)
P 		195.4
(0.1)
P 		267.2
(3)
P 		147
C 186.9
(1.6)
P 		183.7
(1.4)
P 		128.4
(-1.6)
P 		103.1
(-3)
P 		141.9
(-0.9)
P 		211.8
(3)
P 		109
avr 154.5
(-0.3) 		188.5
(1.7) 		118.1
(-2.4) 		108
(-3) 		176.5
(1) 		210
(3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181037_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12484
Sequence Type Exemplar sequence
Representative Public ID F44C4.4 NCBI
Target Description F44C4.4 /REP_DB=WormBase Gene ID /WP=CE28330 /TR=Q20388 /GB=AAA92326.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171475(11), NM_171476(11), NM_072280(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171475 NCBI Caenorhabditis elegans Inositol 1,4,5-trisphosphate Receptor Interacting protein family member (iri-1) (iri-1) mRNA, complete cds. 11/11 None
NM_171476 NCBI Caenorhabditis elegans Inositol 1,4,5-trisphosphate Receptor Interacting protein family member (iri-1) (iri-1) mRNA, complete cds. 11/11 None
NM_072280 NCBI Caenorhabditis elegans Inositol 1,4,5-trisphosphate Receptor Interacting protein family member (iri-1) (iri-1) mRNA, complete cds. 11/11 None
SNAP00000007884 ENSEMBL cdna:SNAP chromosome:CEL140:V:6609347:6613752:-1 11/11 None
GENEFINDER00000007894 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6609397:6615606:-1 11/11 None
F44C4.4a ENSEMBL cdna:known chromosome:CEL140:V:6609038:6613704:-1 gene:F44C4.4 11/11 None
F44C4.4b ENSEMBL cdna:known chromosome:CEL140:V:6609045:6613704:-1 gene:F44C4.4 11/11 A 
F44C4.4c ENSEMBL cdna:known chromosome:CEL140:V:6609050:6613757:-1 gene:F44C4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6610060-6613704(-) 100.0 100.0
Public Domain and Genome References
Ensembl F44C4.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY86229 Inositol 1,4,5-trisphosphate receptor interacting protein protein 1, isoform a [Caenorhabditis elegans] 0.0
blast NP_741557 Inositol 1,4,5-trisphosphate Receptor Interacting protein family member (iri-1) [Caenorhabditis elegans] 0.0
blast NP_504681 Inositol 1,4,5-trisphosphate Receptor Interacting protein family member (iri-1) [Caenorhabditis elegans] 0.0
blast AAY86230 Inositol 1,4,5-trisphosphate receptor interacting protein protein 1, isoform b [Caenorhabditis elegans] 0.0
blast NP_741558 Inositol 1,4,5-trisphosphate Receptor Interacting protein family member (iri-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008906 EMBL-EBI HAT dimerisation 2.6E-5
Pfam IPR008906 EMBL-EBI HAT dimerisation 2.6E-5
Pfam IPR008906 EMBL-EBI HAT dimerisation 2.6E-5
Sequence
Target Sequence 
>C. ELEGANS:181037_AT
gtacggtatccttacacattcgatcaacgaatcagatatctcaaaaaggaaaatgctact
tcgtgcagcgagtgaattagttgaatatcgctcgaagggatctttgatgtgcaaaccaat
ttgcgtaaagcgaagaaaagacgccaattctcctgaagatgcttggtatcatgcaatcga
tgtgagagctctacagattgtagatgtaccatcagacgagcctccaaaacgaatgattcc
tcaacgaacgccatttgtgtatcagaatccaaacccacttccaccgcatcgaattctaca
atcgtttcccacaattcgaacaaacagagaagcaccacatggaagaagtctgaaagatga
aattgcaaaaatcgctgcgaatagacagaagattcagagagtgtacactgttgcttcatc
atcgccgtacgcgaggcctgttgtcgttaaaaccgaatccaaagagggcattgttgaaca
actgactccatcggctcctccaccgaagaggtactac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACGGTATCCTTACACATTCGATC 316 459 2079 Antisense
AAATGCTACTTCGTGCAGCGAGTGA 458 119 2129 Antisense
GACGCCAATTCTCCTGAAGATGCTT 638 381 2218 Antisense
TAGATGTACCATCAGACGAGCCTCC 203 653 2279 Antisense
ATTCCTCAACGAACGCCATTTGTGT 577 7 2314 Antisense
TGTATCAGAATCCAAACCCACTTCC 89 561 2336 Antisense
CGAATTCTACAATCGTTTCCCACAA 184 249 2368 Antisense
GAGTGTACACTGTTGCTTCATCATC 601 401 2477 Antisense
GTACGCGAGGCCTGTTGTCGTTAAA 131 455 2505 Antisense
TTGTTGAACAACTGACTCCATCGGC 20 707 2549 Antisense
GGCTCCTCCACCGAAGAGGTACTAC 666 539 2571 Antisense
Sequence Source Affymetrix Proprietary Database