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[181036_at] 7TM chemoreceptor, srx family

Description R13H7.1 /REP_DB=WormBase Gene ID /WP=CE12814 /TR=Q21991 /GB=AAB03178.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 02      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 1.8
(-3)
A 		5.8
(-2.7)
A 		1.5
(-3)
A 		97.2
(3)
P 		96
B 20.4
(-3)
P 		24
(2)
A 		24.7
(3)
A 		21.1
(-2)
A 		4
C 16.8
(-1.7)
A 		4.8
(-3)
A 		14.2
(-2)
A 		60.5
(3)
P 		56
avr 13
(-2.8) 		11.5
(-3) 		13.5
(-2.8) 		59.6
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 1.6
(-2.9)
A 		2.9
(-2.7)
A 		37.8
(3)
A 		1.1
(-3)
A 		29.1
(1.6)
A 		4.5
(-2.4)
A 		37
B 11.3
(-2.8)
A 		11.7
(-2.7)
A 		29.2
(3)
A 		10.7
(-3)
A 		15
(-1.6)
A 		11.9
(-2.6)
A 		19
C 3.4
(-2.6)
A 		21.9
(2.8)
A 		22.5
(3)
A 		8.7
(-1.1)
A 		13.7
(0.4)
A 		2.1
(-3)
A 		20
avr 5.4
(-3) 		12.2
(-1.3) 		29.8
(3) 		6.8
(-2.7) 		19.3
(0.4) 		6.2
(-2.8) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 0.7
(-2.9)
A 		1.3
(-2.6)
A 		0.4
(-3)
A 		14.2
(3)
P 		14
B 6.5
(3)
P 		5.9
(1.2)
A 		5.7
(0.6)
A 		4.5
(-3)
A 		2
C 5.6
(-0.1)
A 		1.4
(-3)
A 		5
(-0.5)
A 		10.2
(3)
P 		9
avr 4.3
(-1.7) 		2.9
(-3) 		3.7
(-2.3) 		9.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.3
(-3)
A 		1
(-2.5)
A 		8.2
(2.6)
A 		0.3
(-3)
A 		8.8
(3)
A 		1.1
(-2.4)
A 		9
B 3.9
(-1.5)
A 		3.9
(-1.5)
A 		7.1
(3)
A 		2.8
(-3)
A 		6.1
(1.6)
A 		4.5
(-0.6)
A 		4
C 1.2
(-2.5)
A 		6.7
(3)
A 		5.7
(2)
A 		1.8
(-1.9)
A 		4.4
(0.7)
A 		0.7
(-3)
A 		6
avr 1.8
(-2.8) 		3.9
(-0.4) 		7
(3) 		1.6
(-3) 		6.4
(2.3) 		2.1
(-2.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181036_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10198
Sequence Type Exemplar sequence
Representative Public ID R13H7.1 NCBI
Target Description R13H7.1 /REP_DB=WormBase Gene ID /WP=CE12814 /TR=Q21991 /GB=AAB03178.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068655(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068655 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-20) (srx-20) mRNA, complete cds. 11/11 None
GENEFINDER00000029608 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6868075:6869110:1 11/11 None
R13H7.1 ENSEMBL cdna:known chromosome:CEL140:IV:6868075:6869121:1 gene:R13H7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6868080-6869319(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-20
Ensembl R13H7.1
Entrez Gene 187875 Entrez gene
SwissProt Q21991 EMBL-EBI
WormBase CE36559 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03178 Serpentine receptor, class x protein 20 [Caenorhabditis elegans] ref|NP_501056.2| Serpentine Receptor, class X family member (srx-20) [Caenorhabditis elegans] 1.0E-150
blast AAB03178 Serpentine receptor, class x protein 20 [Caenorhabditis elegans] ref|NP_501056.2| Serpentine Receptor, class X family member (srx-20) [Caenorhabditis elegans] 1.0E-148
blast CAE61752 Hypothetical protein CBG05707 [Caenorhabditis briggsae] 2.0E-99
blast AAF98589 Serpentine receptor, class x protein 19 [Caenorhabditis elegans] ref|NP_501057.2| Serpentine Receptor, class X family member (srx-19) [Caenorhabditis elegans] 1.0E-98
blast AAF98589 Serpentine receptor, class x protein 19 [Caenorhabditis elegans] ref|NP_501057.2| Serpentine Receptor, class X family member (srx-19) [Caenorhabditis elegans] 6.0E-98
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501056.2 7 5-27,48-67,77-99,120-142,172-191,221-243,247-269
R13H7.1 7 5-27,48-67,77-99,120-142,172-191,221-243,247-269
GENEFINDER00000029608 7 5-27,48-67,77-99,120-142,172-191,221-243,247-269
Sequence
Target Sequence 
>C. ELEGANS:181036_AT
aattcattcaatcgagttttctctgtttatgttatatttctttacgaaaaagtattttcc
aattttaacacctatataatgatatgtatggcatacgcaattgcaattgttatgtgcact
acattttatgaacttctcgagtgttatctctattttcatgctgatctttggatattttca
tatccagaaacagaacattgtaatcatcttacatggtattgtgattttattttcaatatt
gtattggtcaattttactttaatactcaatctaattgctgcatttaaatctcgaaaatta
catcgaaaaattacatttttggctccaagtgaagtatcaaatcgccggcaaagagaactg
aacttcatcagacaatcattttgtcagggactttttatgagtatttctttgattttttat
cattttactgctccactcatctcgaacaaaattttattgtttctgaatgcaagtttttgg
gcatttatgttggcttttgaaggagtcatcattttaatatcaaatcgagagattttcacg
gctgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCATTCAATCGAGTTTTCTCTG 342 177 301 Antisense
GAGTTTTCTCTGTTTATGTTATATT 297 399 314 Antisense
TATTTTCCAATTTTAACACCTATAT 198 663 353 Antisense
GTGCACTACATTTTATGAACTTCTC 630 479 414 Antisense
GAACTTCTCGAGTGTTATCTCTATT 589 349 430 Antisense
GTTATCTCTATTTTCATGCTGATCT 618 447 443 Antisense
GTGAAGTATCAAATCGCCGGCAAAG 406 481 629 Antisense
TTTTATCATTTTACTGCTCCACTCA 56 677 715 Antisense
TGCTCCACTCATCTCGAACAAAATT 512 581 729 Antisense
GTTTTTGGGCATTTATGTTGGCTTT 121 447 773 Antisense
AATCGAGAGATTTTCACGGCTGTGA 279 169 823 Antisense
Sequence Source Affymetrix Proprietary Database