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[181035_at]

Description F20E11.2 /REP_DB=WormBase Gene ID /WP=CE18611 /TR=Q9XV85 /GB=CAB04140.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 09      6grp_cgc > 58      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 19.4
(-2.4)
A 		3.1
(-3)
A 		42.1
(-1.7)
A 		178.8
(3)
P 		176
B 10.2
(-3)
A 		21
(-2.6)
A 		15.6
(-2.8)
A 		193.9
(3)
P 		184
C 1.9
(-3)
A 		20.5
(-2.5)
A 		17.7
(-2.5)
A 		209.6
(3)
P 		208
avr 10.5
(-3) 		14.9
(-2.9) 		25.1
(-2.5) 		194.1
(3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 2.3
(-3)
A 		21.6
(-0.7)
A 		11.2
(-1.9)
A 		21.4
(-0.7)
A 		28.8
(0.2)
A 		52
(3)
A 		50
B 18.9
(-2.7)
A 		34
(-1.1)
A 		16.1
(-3)
A 		23.6
(-2.2)
A 		33.5
(-1.1)
A 		72.4
(3)
P 		56
C 2.2
(-3)
A 		37.8
(-0.3)
A 		26.7
(-1.2)
A 		27.4
(-1.1)
A 		39.6
(-0.2)
P 		81.7
(3)
P 		80
avr 7.8
(-3) 		31.1
(-0.7) 		18
(-2) 		24.1
(-1.4) 		34
(-0.4) 		68.7
(3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 7.1
(-1.5)
A 		0.7
(-3)
A 		11
(-0.6)
A 		26.2
(3)
P 		26
B 3.2
(-3)
A 		5.2
(-2.7)
A 		3.6
(-2.9)
A 		41.3
(3)
P 		38
C 0.6
(-3)
A 		5.9
(-2.1)
A 		6.2
(-2)
A 		35.3
(3)
P 		35
avr 3.6
(-3) 		3.9
(-2.9) 		6.9
(-2.4) 		34.3
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 0.4
(-3)
A 		7.7
(0.6)
A 		2.4
(-2)
A 		5.4
(-0.6)
A 		8.7
(1)
A 		12.7
(3)
A 		12
B 6.6
(-2.3)
A 		11.3
(-1.1)
A 		3.9
(-3)
A 		6.3
(-2.4)
A 		13.6
(-0.5)
A 		27
(3)
P 		23
C 0.8
(-3)
A 		11.5
(-0.6)
A 		6.8
(-1.6)
A 		5.5
(-1.9)
A 		12.8
(-0.3)
P 		27.4
(3)
P 		27
avr 2.6
(-3) 		10.2
(-0.7) 		4.4
(-2.5) 		5.7
(-2.1) 		11.7
(-0.2) 		22.4
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181035_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12655
Sequence Type Exemplar sequence
Representative Public ID F20E11.2 NCBI
Target Description F20E11.2 /REP_DB=WormBase Gene ID /WP=CE18611 /TR=Q9XV85 /GB=CAB04140.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075009
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F20E11.2 ENSEMBL cdna:known chromosome:CEL140:V:17438255:17440994:-1 gene:F20E11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075009 5/11 Cross Hyb Matching Probes None
SNAP00000027624 6/11 Cross Hyb Matching Probes None
SNAP00000027625 5/11 Cross Hyb Matching Probes None
GENEFINDER00000027636 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17438254-17440994(-) 100.0 100.0
Public Domain and Genome References
Ensembl F20E11.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04140 Hypothetical protein F20E11.2 [Caenorhabditis elegans] ref|NP_507410.2| Serpentine Receptor, class SX family member (srsx-2) [Caenorhabditis elegans] 1.0E-150
blast CAB04364 Hypothetical protein F40D4.5 [Caenorhabditis elegans] ref|NP_507347.1| Serpentine Receptor, class SX family member (srsx-1) [Caenorhabditis elegans] 1.0E-144
blast AAK71417 Serpentine receptor, class sx protein 3 [Caenorhabditis elegans] ref|NP_505041.1| Serpentine Receptor, class SX family member (srsx-3) [Caenorhabditis elegans] 1.0E-116
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
F20E11.2 8 10-32,51-73,83-114,121-143,170-192,213-235,245-263,283-305
Sequence
Target Sequence 
>C. ELEGANS:181035_AT
aagtttccacaattgtcttcattttctcctggtacatgtgcatgcttgcaaacgatttat
ttgtcgccattggaataactggaccgcttcttgtattttgtaagagcaatatggtttttt
tcgcgcttgtctgttttgcccaaccattttatgtgatgctgtggaaatcatcggactatc
gagacgctttcattgatatgtggagtttcttggaattcaacatgcatttcgttgtctaca
ttcttgtccttgtcgcctgtgctccgattatcggattctcacagatgtatgatgatggtt
cttattctagtcatgaagatggtatagtgagcgatggagtgcaggcggtgaaagggattg
tgcaagacgctgagaatacgctcacagatggtctttcaaaaatattaccgcagggatcaa
accatgagcatcaacttcagaatcgtccacaattgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTTCCACAATTGTCTTCATTTT 347 157 638 Antisense
TCTTCATTTTCTCCTGGTACATGTG 385 617 653 Antisense
GTCGCCATTGGAATAACTGGACCGC 567 473 700 Antisense
CAATATGGTTTTTTTCGCGCTTGTC 306 181 744 Antisense
CGGACTATCGAGACGCTTTCATTGA 374 243 809 Antisense
ATTTCGTTGTCTACATTCTTGTCCT 365 17 863 Antisense
TCGCCTGTGCTCCGATTATCGGATT 335 599 890 Antisense
GTGAGCGATGGAGTGCAGGCGGTGA 660 481 964 Antisense
GAATACGCTCACAGATGGTCTTTCA 53 327 1011 Antisense
ACCGCAGGGATCAAACCATGAGCAT 283 89 1044 Antisense
ACTTCAGAATCGTCCACAATTGTAC 40 103 1071 Antisense
Sequence Source Affymetrix Proprietary Database