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[181034_at]

Description Y9C9A.8 /REP_DB=WormBase Gene ID /WP=CE25657 /TR=Q9N2T3 /GB=AAF60932.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 22      4grp_high_8_8 > 40      6grp_total > 22      4grp_total > 47      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 338.5
(3)
P 		153.1
(-2.4)
P 		134.5
(-2.9)
P 		130.6
(-3)
A 		208
B 416.1
(3)
P 		126.7
(-2)
P 		166.7
(-1.3)
P 		69.9
(-3)
A 		346
C 398.9
(3)
P 		168.4
(-2)
P 		151.3
(-2.3)
P 		120.4
(-3)
P 		279
avr 384.5
(3) 		149.4
(-2.1) 		150.8
(-2.1) 		107
(-3) 		278

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 261.8
(3)
P 		197
(1.2)
P 		207.9
(1.5)
P 		195.3
(1.2)
P 		146.3
(-0.1)
P 		41.2
(-3)
A 		221
B 247.9
(3)
P 		229.3
(2.4)
P 		230.8
(2.5)
P 		193.5
(1.4)
P 		118.9
(-0.9)
P 		47.7
(-3)
P 		200
C 176.2
(0.6)
P 		254.2
(3)
P 		191
(1)
P 		133.5
(-0.8)
P 		115.7
(-1.3)
P 		61.9
(-3)
P 		192
avr 228.6
(3) 		226.8
(2.9) 		209.9
(2.4) 		174.1
(1.2) 		127
(-0.4) 		50.3
(-3) 		178
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 123.2
(3)
P 		33.2
(-2.2)
P 		35.1
(-2.1)
P 		19.1
(-3)
A 		104
B 132.7
(3)
P 		31.3
(-2.2)
P 		38.6
(-1.8)
P 		14.9
(-3)
A 		118
C 132
(3)
P 		48.4
(-1.5)
P 		52.7
(-1.3)
P 		20.3
(-3)
P 		112
avr 129.3
(3) 		37.6
(-1.9) 		42.1
(-1.7) 		18.1
(-3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 48.3
(0.8)
P 		70.1
(3)
P 		45.3
(0.5)
P 		49.5
(0.9)
P 		44.2
(0.4)
P 		10
(-3)
A 		60
B 86.2
(3)
P 		76.3
(2.1)
P 		56.1
(0.4)
P 		51.3
(-0.1)
P 		48.3
(-0.3)
P 		17.8
(-3)
P 		68
C 65.3
(1.7)
P 		77.6
(3)
P 		48.6
(-0.1)
P 		26.8
(-2.4)
P 		37.4
(-1.2)
P 		20.7
(-3)
P 		57
avr 66.6
(2.2) 		74.7
(3) 		50
(0.5) 		42.5
(-0.3) 		43.3
(-0.2) 		16.2
(-3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181034_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10574
Sequence Type Exemplar sequence
Representative Public ID Y9C9A.8 NCBI
Target Description Y9C9A.8 /REP_DB=WormBase Gene ID /WP=CE25657 /TR=Q9N2T3 /GB=AAF60932.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068275(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068275 NCBI Caenorhabditis elegans Y9C9A.8 (Y9C9A.8) mRNA, complete cds. 11/11 None
SNAP00000021393 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4931232:4932207:1 11/11 None
GENEFINDER00000021408 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4931130:4932207:1 11/11 None
Y9C9A.8 ENSEMBL cdna:known chromosome:CEL140:IV:4920345:4932207:1 gene:Y9C9A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4920350-4932213(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y9C9A.8
Entrez Gene 177261 Entrez gene
SwissProt Q9N2T3 EMBL-EBI
WormBase CE25657 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500676 Y9C9A.8 [Caenorhabditis elegans] gb|AAF60932.1| Hypothetical protein Y9C9A.8 [Caenorhabditis elegans] 0.0
blast NP_500676 Y9C9A.8 [Caenorhabditis elegans] gb|AAF60932.1| Hypothetical protein Y9C9A.8 [Caenorhabditis elegans] 1.0E-168
blast NP_500676 Y9C9A.8 [Caenorhabditis elegans] gb|AAF60932.1| Hypothetical protein Y9C9A.8 [Caenorhabditis elegans] 1.0E-157
blast CAB63437 Hypothetical protein C38D9.6 [Caenorhabditis elegans] ref|NP_507448.1| C38D9.6 [Caenorhabditis elegans] 9.0E-48
blast CAB63202 Hypothetical protein F47H4.6 [Caenorhabditis elegans] ref|NP_507389.1| F47H4.6 [Caenorhabditis elegans] 2.0E-47
blast CAB63437 Hypothetical protein C38D9.6 [Caenorhabditis elegans] ref|NP_507448.1| C38D9.6 [Caenorhabditis elegans] 7.0E-32
blast CAB07208 Hypothetical protein F47H4.9 [Caenorhabditis elegans] ref|NP_507392.1| F47H4.9 [Caenorhabditis elegans] 1.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.4E-57
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.7E-10
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.4E-57
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.4E-57
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.7E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500676.1 4 10-32,57-79,101-120,171-193
Y9C9A.8 4 10-32,57-79,101-120,171-193
Sequence
Target Sequence 
>C. ELEGANS:181034_AT
tgaaatcccatttgaattccctccgattaggagttccccaggaaatcagtccatttggac
caagttgttgccttaacaaagaagagaggaagatttgcattgaaaaaattgagaataaac
tcaaaacagaaaatacaaagttcaatgtaaagaaattcgtgatcagggggttttccttcc
atcaagttgctactttgttaccttacttcaaagagaaagttcttgaagaaattcatctag
aaatgtataacaccgaaatggaagaagaatctactgaagttttgttcaatctggatcagt
ggaaaaacgcaaaaattcttgaaattaagtggaatgtcaatttaccaattccagtggaac
attattcacacttttctcgtttccacatttccacgacagatttcactatcaacgatgcaa
ttaaaattagagatgaactcatcaagcgtgacacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAATCCCATTTGAATTCCCTCCG 214 573 1391 Antisense
TTCCCTCCGATTAGGAGTTCCCCAG 678 675 1407 Antisense
GGAGTTCCCCAGGAAATCAGTCCAT 6 519 1420 Antisense
TTTGGACCAAGTTGTTGCCTTAACA 426 655 1444 Antisense
TCGTGATCAGGGGGTTTTCCTTCCA 55 599 1547 Antisense
TTTCCTTCCATCAAGTTGCTACTTT 667 669 1562 Antisense
TTGCTACTTTGTTACCTTACTTCAA 371 703 1577 Antisense
ACATTATTCACACTTTTCTCGTTTC 421 105 1749 Antisense
TTTCCACATTTCCACGACAGATTTC 590 669 1770 Antisense
GACAGATTTCACTATCAACGATGCA 461 369 1785 Antisense
GATGAACTCATCAAGCGTGACACAT 2 413 1822 Antisense
Sequence Source Affymetrix Proprietary Database