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[181033_at]

Description F36D4.6 /REP_DB=WormBase Gene ID /WP=CE07194 /TR=Q20104 /GB=AAA93490.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 1.1
(-3)
A 		7.8
(-1.6)
A 		1.3
(-3)
A 		30.7
(3)
A 		30
B 3.3
(-0.3)
A 		1.4
(-3)
A 		2.9
(-0.9)
A 		5.7
(3)
A 		4
C 2.9
(-2.6)
A 		4.5
(-2.3)
A 		1
(-3)
A 		32.2
(3)
A 		31
avr 2.4
(-2.8) 		4.6
(-2.2) 		1.7
(-3) 		22.9
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 24.8
(3)
A 		1.1
(-3)
A 		1
(-3)
A 		1.7
(-2.8)
A 		8.6
(-1.1)
A 		1.8
(-2.8)
A 		24
B 1.3
(-3)
A 		5.3
(1.9)
A 		3.4
(-0.4)
A 		1.7
(-2.5)
A 		5.7
(2.4)
A 		6.2
(3)
A 		5
C 0.7
(-3)
A 		0.9
(-2.8)
A 		7.2
(3)
A 		2.6
(-1.2)
A 		2
(-1.8)
A 		3.1
(-0.8)
A 		7
avr 8.9
(3) 		2.4
(-2.7) 		3.9
(-1.3) 		2
(-3) 		5.4
(-0) 		3.7
(-1.5) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.4
(-2.9)
A 		1.7
(-1)
A 		0.3
(-3)
A 		4.5
(3)
A 		4
B 1
(1.7)
A 		0.3
(-3)
A 		0.7
(-0.3)
A 		1.2
(3)
A 		1
C 1
(-2.2)
A 		1.3
(-1.8)
A 		0.3
(-3)
A 		5.4
(3)
A 		5
avr 0.8
(-2.3) 		1.1
(-1.7) 		0.4
(-3) 		3.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 4.6
(3)
A 		0.4
(-2.7)
A 		0.2
(-3)
A 		0.4
(-2.7)
A 		2.6
(0.3)
A 		0.4
(-2.7)
A 		4
B 0.4
(-3)
A 		1.7
(1.1)
A 		0.8
(-1.7)
A 		0.5
(-2.7)
A 		2.3
(3)
A 		2.3
(3)
A 		2
C 0.3
(-3)
A 		0.3
(-3)
A 		1.8
(3)
A 		0.5
(-2.2)
A 		0.6
(-1.8)
A 		1
(-0.2)
A 		2
avr 1.8
(3) 		0.8
(-1.6) 		0.9
(-1.2) 		0.5
(-3) 		1.8
(3) 		1.2
(0.2) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181033_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11732
Sequence Type Exemplar sequence
Representative Public ID F36D4.6 NCBI
Target Description F36D4.6 /REP_DB=WormBase Gene ID /WP=CE07194 /TR=Q20104 /GB=AAA93490.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073038(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073038 NCBI Caenorhabditis elegans F36D4.6 (F36D4.6) mRNA, complete cds. 11/11 None
SNAP00000038760 ENSEMBL cdna:SNAP chromosome:CEL140:V:9429436:9429947:-1 11/11 None
F36D4.6 ENSEMBL cdna:known chromosome:CEL140:V:9429436:9430107:-1 gene:F36D4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9429435-9430107(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36D4.6
Entrez Gene 185358 Entrez gene
SwissProt Q20104 EMBL-EBI
WormBase CE07194 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA93490 Hypothetical protein F36D4.6 [Caenorhabditis elegans] ref|NP_505439.1| F36D4.6 [Caenorhabditis elegans] 2.0E-70
blast AAA93490 Hypothetical protein F36D4.6 [Caenorhabditis elegans] ref|NP_505439.1| F36D4.6 [Caenorhabditis elegans] 6.0E-68
blast CAA16516 Hypothetical protein W06H3.1 [Caenorhabditis elegans] ref|NP_507241.2| W06H3.1 [Caenorhabditis elegans] 1.0E-17
blast CAE56605 Hypothetical protein CBG24360 [Caenorhabditis briggsae] 3.0E-15
Sequence
Target Sequence 
>C. ELEGANS:181033_AT
caaactgtttttatctactcttcgcctcctgtcaattcgtctatggctactgacaatgtg
aggctggaaaggatggaaattgggatgcagttactgttgctcaggatggctgaaaaggac
ggagaagccgagaaattggctagagctgagcttatcacagaagcaaacctcggcggccag
ggcgagactactcagctgaatccactggttccagtctccaaagcaactgctgaaaaactt
tcgaacgagctggatgaggttggcaggaatcgaacagcaaggtggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAACTGTTTTTATCTACTCTTCGC 374 189 100 Antisense
CGCCTCCTGTCAATTCGTCTATGGC 453 257 122 Antisense
CCTGTCAATTCGTCTATGGCTACTG 212 265 127 Antisense
ATGGCTACTGACAATGTGAGGCTGG 156 51 142 Antisense
GGAAATTGGGATGCAGTTACTGTTG 13 527 174 Antisense
GCAGTTACTGTTGCTCAGGATGGCT 455 311 186 Antisense
GGCTAGAGCTGAGCTTATCACAGAA 83 539 237 Antisense
TATCACAGAAGCAAACCTCGGCGGC 238 659 252 Antisense
GGTTCCAGTCTCCAAAGCAACTGCT 466 507 306 Antisense
GAACGAGCTGGATGAGGTTGGCAGG 44 347 342 Antisense
GCAGGAATCGAACAGCAAGGTGGTC 309 309 362 Antisense
Sequence Source Affymetrix Proprietary Database