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[181032_at]

Description T11F1.8 /REP_DB=WormBase Gene ID /WP=CE20058 /TR=Q9U8C7 /GB=AAC68705.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 43      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 57.5
(1.5)
A 		65.9
(3)
A 		40.1
(-1.5)
A 		31.2
(-3)
A 		35
B 22.7
(-3)
A 		72.5
(3)
P 		48.5
(0.1)
A 		51.2
(0.4)
A 		50
C 49.5
(-0.9)
A 		44.5
(-3)
A 		44.6
(-3)
A 		58.7
(3)
A 		14
avr 43.2
(-3) 		61
(3) 		44.4
(-2.6) 		47
(-1.7) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 101.3
(3)
A 		35.9
(-1)
A 		7.3
(-2.8)
A 		4
(-3)
A 		46.7
(-0.4)
A 		20.8
(-2)
A 		97
B 31.3
(3)
A 		8.3
(-2)
A 		3.6
(-3)
A 		28.9
(2.5)
A 		28.6
(2.4)
A 		29.2
(2.5)
A 		28
C 19
(-1.9)
A 		45.1
(0.5)
A 		71.8
(3)
A 		41.1
(0.2)
A 		6.8
(-3)
A 		34.5
(-0.4)
A 		65
avr 50.5
(3) 		29.8
(-1.8) 		27.6
(-2.3) 		24.7
(-3) 		27.4
(-2.4) 		28.2
(-2.2) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 20.9
(3)
A 		14.3
(0.6)
A 		10.5
(-0.8)
A 		4.6
(-3)
A 		16
B 7.2
(-3)
A 		17.9
(3)
P 		11.2
(-0.8)
A 		10.9
(-0.9)
A 		11
C 16.4
(3)
A 		12.8
(-0.3)
A 		15.5
(2.2)
A 		9.9
(-3)
A 		7
avr 14.8
(2.8) 		15
(3) 		12.4
(0.6) 		8.5
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 18.7
(3)
A 		12.8
(1)
A 		1.6
(-2.8)
A 		1
(-3)
A 		14.1
(1.4)
A 		5.1
(-1.6)
A 		18
B 10.9
(2.6)
A 		2.8
(-1.9)
A 		0.9
(-3)
A 		7.7
(0.8)
A 		11.6
(3)
A 		10.9
(2.6)
A 		11
C 7
(-1.2)
A 		13.7
(1.3)
A 		18.3
(3)
A 		8.3
(-0.7)
A 		2.2
(-3)
A 		11.5
(0.5)
A 		16
avr 12.2
(3) 		9.8
(0.8) 		6.9
(-1.9) 		5.7
(-3) 		9.3
(0.3) 		9.2
(0.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181032_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4847
Sequence Type Exemplar sequence
Representative Public ID T11F1.8 NCBI
Target Description T11F1.8 /REP_DB=WormBase Gene ID /WP=CE20058 /TR=Q9U8C7 /GB=AAC68705.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062008(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062008 NCBI Caenorhabditis elegans T11F1.8 (T11F1.8) mRNA, complete cds. 11/11 None
SNAP00000009448 ENSEMBL cdna:SNAP chromosome:CEL140:II:2948977:2949778:-1 11/11 None
GENEFINDER00000009460 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2948977:2955341:-1 11/11 None
T11F1.8 ENSEMBL cdna:known chromosome:CEL140:II:2948924:2956035:-1 gene:T11F1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2948922-2956034(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T11F1.8
Entrez Gene 188415 Entrez gene
SwissProt Q9U8C7 EMBL-EBI
WormBase CE20058 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68705 Hypothetical protein T11F1.8 [Caenorhabditis elegans] ref|NP_494409.1| T11F1.8 [Caenorhabditis elegans] 0.0
blast AAF39999 Hypothetical protein ZK355.5 [Caenorhabditis elegans] ref|NP_494404.1| ZK355.5 [Caenorhabditis elegans] 1.0E-113
blast CAE58128 Hypothetical protein CBG01216 [Caenorhabditis briggsae] 1.0E-106
blast AAC68705 Hypothetical protein T11F1.8 [Caenorhabditis elegans] ref|NP_494409.1| T11F1.8 [Caenorhabditis elegans] 5.0E-88
blast CAA19492 Hypothetical protein Y37A1B.9 [Caenorhabditis elegans] ref|NP_502687.1| Y37A1B.9 [Caenorhabditis elegans] 1.0E-24
blast AAF39999 Hypothetical protein ZK355.5 [Caenorhabditis elegans] ref|NP_494404.1| ZK355.5 [Caenorhabditis elegans] 1.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.7E-9
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.6E-8
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.1E-5
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 7.4E-14
Sequence
Target Sequence 
>C. ELEGANS:181032_AT
atgctctacgactctaactttatccgctattccatgaacattgagaatctacaccccgat
ttctgtctgacaatcgccgaaatgttagttttcctcgcaatgtccactatcaatttcgaa
aatatacaagccaaatattgcgaagatgaggatggaggactattccaaaaattttgtaca
tttcaaaacttatccactctcgacgaaaactgtaacgcaatttttggagatgttgtattt
ggagaaaacgatggaaggtatatgtccaagttttttgcaactctcccagcaatatctatc
acttctaaccaatatctcaaaagcgccaaactgaacaacctaatgagtgtaatcgcggag
agcaagaaagaagttgtacttcgtgataattccatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTCTACGACTCTAACTTTATCC 215 41 2164 Antisense
AACTTTATCCGCTATTCCATGAACA 607 139 2179 Antisense
GAACATTGAGAATCTACACCCCGAT 214 351 2199 Antisense
CACCCCGATTTCTGTCTGACAATCG 101 201 2215 Antisense
AATGTTAGTTTTCCTCGCAATGTCC 206 165 2244 Antisense
CGCAATGTCCACTATCAATTTCGAA 32 255 2259 Antisense
TTCAAAACTTATCCACTCTCGACGA 70 685 2345 Antisense
GCAACTCTCCCAGCAATATCTATCA 96 321 2440 Antisense
ATCTATCACTTCTAACCAATATCTC 592 31 2457 Antisense
AAAGCGCCAAACTGAACAACCTAAT 9 123 2483 Antisense
GTTGTACTTCGTGATAATTCCATGT 75 437 2536 Antisense
Sequence Source Affymetrix Proprietary Database