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[181031_at]

Description F20E11.9 /REP_DB=WormBase Gene ID /WP=CE18618 /TR=Q9XV79 /GB=CAB04146.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 21      6grp_cgc > 99      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 3.3
(-2.8)
A 		12.7
(3)
A 		5.1
(-1.7)
A 		2.9
(-3)
A 		10
B 14.3
(0.4)
A 		10.4
(-2.3)
A 		9.3
(-3)
A 		18.2
(3)
A 		9
C 13
(2)
A 		2
(-2.5)
A 		0.9
(-3)
A 		15.4
(3)
P 		15
avr 10.2
(1.3) 		8.4
(-0.2) 		5.1
(-3) 		12.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 1.5
(-2.9)
A 		1.2
(-2.9)
A 		1
(-3)
A 		3.1
(-2.4)
A 		23.2
(3)
A 		13.2
(0.3)
A 		22
B 9
(-0.6)
A 		14.2
(1)
A 		1.5
(-2.8)
A 		1
(-3)
A 		20.8
(3)
A 		13.4
(0.8)
A 		20
C 1.2
(-3)
A 		16.2
(0.5)
A 		27
(3)
A 		13.9
(-0)
A 		3.6
(-2.4)
A 		2.2
(-2.8)
A 		26
avr 3.9
(-3) 		10.5
(0.3) 		9.8
(-0) 		6
(-2) 		15.9
(3) 		9.6
(-0.2) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1.2
(-0.9)
A 		2.7
(3)
A 		1.3
(-0.7)
A 		0.4
(-3)
A 		2
B 4.6
(3)
A 		2.6
(-2)
A 		2.2
(-3)
A 		3.9
(1.3)
A 		2
C 4.3
(3)
A 		0.6
(-2.6)
A 		0.3
(-3)
A 		2.6
(0.5)
P 		4
avr 3.4
(3) 		2
(-1) 		1.3
(-3) 		2.3
(-0.1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.3
(-2.9)
A 		0.4
(-2.8)
A 		0.2
(-3)
A 		0.8
(-2.5)
A 		7
(3)
A 		3.2
(-0.4)
A 		7
B 3.1
(-1)
A 		4.7
(0.2)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		8.5
(3)
A 		5
(0.4)
A 		8
C 0.5
(-3)
A 		4.9
(1.1)
A 		6.9
(3)
A 		2.8
(-0.8)
A 		1.2
(-2.3)
A 		0.7
(-2.8)
A 		6
avr 1.3
(-3) 		3.3
(-0.2) 		2.5
(-1.3) 		1.3
(-3) 		5.6
(3) 		3
(-0.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181031_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13527
Sequence Type Exemplar sequence
Representative Public ID F20E11.9 NCBI
Target Description F20E11.9 /REP_DB=WormBase Gene ID /WP=CE18618 /TR=Q9XV79 /GB=CAB04146.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F20E11.9 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17453385:17454708:1 gene:F20E11.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027639 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17453384-17454708(+) 100.0 100.0
Public Domain and Genome References
Ensembl F20E11.9
Sequence
Target Sequence 
>C. ELEGANS:181031_AT
gtttcggttgttgtttattacagcaaactatgtttctgctacaatgtaccctgcgccggt
attctttttccttcctgatcaagaatatggaagacttttattgaaaaaaaaatcagtgta
ttccaaacgtttttttcgatcatccaaactttttttgcttgttctcgatggtgagtatat
tgccaattatatgctatttgcgttgactatttttttgtctcaaatgttttggcaaatcgg
gatgattttccgtcatttgcttaaaagtactcctgtttctaagagcacaattcgtttaca
acaacagttttttatcgcaatgagcctgcaagttatcattccaattgtcataatcgcttt
tccatcgttttatatgtttttttcagttacatctggttattataatcaaggcgctaacaa
catagtgtttactgtaatttccatgcatggagtgttatccacttgtacaatgaggatggc
atacagaccttatagagaatcaattgtccaaatgttgaatctgaatttcaaacagtccgg
tagccgagctcaacttatttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCGGTTGTTGTTTATTACAGCA 178 449 417 Antisense
AAACTATGTTTCTGCTACAATGTAC 136 127 441 Antisense
TCCAAACGTTTTTTTCGATCATCCA 186 277 538 Antisense
TTTTTTTGCTTGTTCTCGATGGTGA 366 673 566 Antisense
TTGCGTTGACTATTTTTTTGTCTCA 621 701 614 Antisense
AGTACTCCTGTTTCTAAGAGCACAA 226 63 682 Antisense
GTCATAATCGCTTTTCCATCGTTTT 615 467 763 Antisense
GTGTTTACTGTAATTTCCATGCATG 68 487 841 Antisense
AGTGTTATCCACTTGTACAATGAGG 606 59 867 Antisense
GAATTTCAAACAGTCCGGTAGCCGA 328 325 939 Antisense
CGGTAGCCGAGCTCAACTTATTTGG 489 205 954 Antisense
Sequence Source Affymetrix Proprietary Database