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[181030_at] 7TM chemoreceptor, sri family

Description Y69E1A.6 /REP_DB=WormBase Gene ID /WP=CE22813 /TR=Q9XW32 /GB=CAA22263.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 27      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 38.1
(1.1)
A 		52.1
(3)
A 		7.6
(-3)
A 		33.8
(0.5)
A 		45
B 8.3
(-2.7)
A 		40.9
(3)
A 		12.4
(-2)
A 		6.5
(-3)
A 		34
C 13.1
(-2.7)
A 		15.2
(-2.4)
A 		9.9
(-3)
A 		67.7
(3)
P 		58
avr 19.8
(-0.7) 		36.1
(3) 		10
(-3) 		36
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 47
(2.2)
A 		53.8
(3)
A 		7.2
(-2.7)
A 		4.9
(-3)
A 		16.7
(-1.6)
A 		9.3
(-2.5)
A 		49
B 40.4
(1.4)
A 		51
(3)
A 		48.7
(2.7)
A 		11.1
(-3)
A 		14.9
(-2.4)
A 		11.6
(-2.9)
A 		40
C 44.5
(2.8)
A 		46
(3)
A 		36.1
(1.6)
A 		30.5
(0.8)
A 		10.2
(-2.1)
A 		4.2
(-3)
A 		42
avr 44
(2.1) 		50.3
(3) 		30.7
(0.2) 		15.5
(-2) 		13.9
(-2.2) 		8.4
(-3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.9
(3)
A 		11.3
(1.7)
A 		2
(-3)
A 		5
(-1.5)
A 		12
B 2.6
(-2.2)
A 		10.1
(3)
A 		2.9
(-2)
A 		1.4
(-3)
A 		9
C 4.3
(-2.3)
A 		4.4
(-2.3)
A 		3.4
(-3)
A 		11.4
(3)
P 		8
avr 6.9
(1.2) 		8.6
(3) 		2.8
(-3) 		5.9
(0.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 8.7
(-0.5)
A 		19.1
(3)
A 		1.6
(-2.9)
A 		1.2
(-3)
A 		5
(-1.7)
A 		2.3
(-2.6)
A 		18
B 14.1
(1.8)
A 		17
(3)
A 		11.8
(0.8)
A 		2.9
(-3)
A 		6.1
(-1.6)
A 		4.3
(-2.4)
A 		14
C 16.5
(3)
A 		14
(2)
A 		9.2
(0.1)
A 		6.1
(-1.1)
A 		3.3
(-2.2)
A 		1.4
(-3)
A 		15
avr 13.1
(1.5) 		16.7
(3) 		7.5
(-0.9) 		3.4
(-2.7) 		4.8
(-2.1) 		2.7
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181030_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10122
Sequence Type Exemplar sequence
Representative Public ID Y69E1A.6 NCBI
Target Description Y69E1A.6 /REP_DB=WormBase Gene ID /WP=CE22813 /TR=Q9XW32 /GB=CAA22263.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069642(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069642 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-19) (sri-19) mRNA, complete cds. 11/11 None
SNAP00000037376 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10959707:10961178:1 10/11 None
GENEFINDER00000037380 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10959164:10961178:1 11/11 None
Y69E1A.6 ENSEMBL cdna:known chromosome:CEL140:IV:10959047:10961178:1 gene:Y69E1A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10959052-10961184(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-19
Ensembl Y69E1A.6
Entrez Gene 190552 Entrez gene
SwissProt Q9XW32 EMBL-EBI
WormBase CE22813 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22263 Hypothetical protein Y69E1A.6 [Caenorhabditis elegans] ref|NP_502043.1| Serpentine Receptor, class I family member (sri-19) [Caenorhabditis elegans] 0.0
blast CAA22263 Hypothetical protein Y69E1A.6 [Caenorhabditis elegans] ref|NP_502043.1| Serpentine Receptor, class I family member (sri-19) [Caenorhabditis elegans] 1.0E-170
blast CAE61965 Hypothetical protein CBG05965 [Caenorhabditis briggsae] 1.0E-142
blast CAE61965 Hypothetical protein CBG05965 [Caenorhabditis briggsae] 1.0E-124
blast CAA22263 Hypothetical protein Y69E1A.6 [Caenorhabditis elegans] ref|NP_502043.1| Serpentine Receptor, class I family member (sri-19) [Caenorhabditis elegans] 5.0E-70
blast CAE61965 Hypothetical protein CBG05965 [Caenorhabditis briggsae] 2.0E-49
blast CAB02830 Hypothetical protein C41G6.10 [Caenorhabditis elegans] ref|NP_506760.1| Serpentine Receptor, class I family member (sri-25) [Caenorhabditis elegans] 2.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.9E-82
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.6E-15
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.2E-30
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.5E-72
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502043.1 7 15-37,58-80,100-122,135-157,198-220,248-270,280-302
Y69E1A.6 7 15-37,58-80,100-122,135-157,198-220,248-270,280-302
SNAP00000037376 4 5-22,27-49,99-121,131-153
GENEFINDER00000037380 6 21-43,58-80,97-119,159-181,209-231,241-263
Sequence
Target Sequence 
>C. ELEGANS:181030_AT
gggtgtgcgtttgtcattacaggattttttagtgtttcttgtttggcacgacaagaggaa
gaaaatttgattaaaacgaagtttccaaatgcgatcagcgtattcacattggaaaatgtg
gcaatttacgatttgcaagttaataagtggatgatgataacaactatactttttgcattt
atgctaactagttctattgtgatatctttttatttttccgtccgacttctaaaaacactt
ccatcaaagagaaacacaatatcagctcgtagcttccgtggacatcagattgcagtgaca
agtttgatggcacaggcaactgttccatttttagtgctaattattccaattggcacaatt
gtctatttatttgttcatgtgttgcctaacgcacaagaaatatcaaacataatgatggca
gtctactcattccatgcttcattgtctacatttgtaatgatcatcagtactcctcaatac
agaaaaatgattcgaagaggatttagggctcaacacccaattatatcaactcagatgaca
aaagtcggtccaccatcagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTGTGCGTTTGTCATTACAGGAT 92 499 451 Antisense
GTCCGACTTCTAAAAACACTTCCAT 509 475 670 Antisense
AATATCAGCTCGTAGCTTCCGTGGA 367 173 708 Antisense
AGCTTCCGTGGACATCAGATTGCAG 610 77 721 Antisense
GATGGCACAGGCAACTGTTCCATTT 287 405 756 Antisense
ATTTGTTCATGTGTTGCCTAACGCA 130 19 819 Antisense
TGATGGCAGTCTACTCATTCCATGC 349 567 863 Antisense
CATTCCATGCTTCATTGTCTACATT 384 217 878 Antisense
TGATCATCAGTACTCCTCAATACAG 230 563 908 Antisense
GGCTCAACACCCAATTATATCAACT 295 537 957 Antisense
TGACAAAAGTCGGTCCACCATCAGC 415 571 986 Antisense
Sequence Source Affymetrix Proprietary Database