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[181029_at]

Description B0507.5 /REP_DB=WormBase Gene ID /WP=CE07764 /TR=Q22879 /GB=AAB04815.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 3.1
(-3)
A 		3.7
(-3)
A 		28.5
(-1.6)
A 		115
(3)
A 		112
B 42.2
(3)
A 		25.5
(0.5)
A 		2.5
(-3)
A 		30.7
(1.3)
A 		40
C 15.7
(-2.1)
A 		45.8
(-0.1)
A 		1.5
(-3)
A 		93.1
(3)
A 		92
avr 20.3
(-2.2) 		25
(-1.8) 		10.8
(-3) 		79.6
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 6.2
(-2.3)
A 		35.8
(3)
A 		28.3
(1.7)
A 		17.4
(-0.3)
A 		28.7
(1.7)
A 		2.2
(-3)
A 		34
B 10.4
(-1.3)
A 		19.9
(2.3)
A 		6
(-3)
A 		21.7
(3)
A 		8.7
(-2)
A 		10.6
(-1.2)
A 		16
C 5.3
(-2.3)
A 		9.8
(-1.7)
A 		0.6
(-3)
A 		44.8
(3)
A 		0.5
(-3)
A 		3.4
(-2.6)
A 		44
avr 7.3
(-2.5) 		21.8
(1.4) 		11.6
(-1.4) 		28
(3) 		12.6
(-1.1) 		5.4
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 1.1
(-2.9)
A 		0.8
(-3)
A 		7.4
(-0.5)
A 		16.8
(3)
A 		16
B 13.5
(3)
A 		6.3
(-0.3)
A 		0.6
(-3)
A 		6.5
(-0.3)
A 		13
C 5.2
(-1.1)
A 		13.2
(2)
A 		0.5
(-3)
A 		15.7
(3)
A 		15
avr 6.6
(-0.8) 		6.8
(-0.6) 		2.8
(-3) 		13
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.1
(-2.7)
A 		12.7
(3)
A 		6.2
(-0.2)
A 		4.4
(-1.1)
A 		8.7
(1)
A 		0.5
(-3)
A 		12
B 3.6
(-0.5)
A 		6.6
(3)
A 		1.4
(-3)
A 		5.7
(2)
A 		3.5
(-0.6)
A 		3.9
(-0.1)
A 		5
C 2
(-1.7)
A 		3
(-1)
A 		0.1
(-3)
A 		9
(3)
A 		0.2
(-2.9)
A 		1.1
(-2.3)
A 		9
avr 2.2
(-2.6) 		7.4
(3) 		2.6
(-2.1) 		6.4
(1.9) 		4.1
(-0.5) 		1.8
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181029_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11356
Sequence Type Exemplar sequence
Representative Public ID B0507.5 NCBI
Target Description B0507.5 /REP_DB=WormBase Gene ID /WP=CE07764 /TR=Q22879 /GB=AAB04815.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072853(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072853 NCBI Caenorhabditis elegans B0507.5 (B0507.5) mRNA, complete cds. 11/11 None
GENEFINDER00000006066 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8756283:8758347:1 9/11 None
B0507.5 ENSEMBL cdna:known chromosome:CEL140:V:8756283:8757461:1 gene:B0507.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8756283-8757462(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0507.5
Entrez Gene 182012 Entrez gene
SwissProt Q22879 EMBL-EBI
WormBase CE07764 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04815 Hypothetical protein B0507.5 [Caenorhabditis elegans] ref|NP_505254.1| B0507.5 [Caenorhabditis elegans] 1.0E-121
blast AAB04815 Hypothetical protein B0507.5 [Caenorhabditis elegans] ref|NP_505254.1| B0507.5 [Caenorhabditis elegans] 8.0E-89
blast AAB04816 Hypothetical protein B0507.4 [Caenorhabditis elegans] ref|NP_505255.2| B0507.4 [Caenorhabditis elegans] 9.0E-59
blast AAB52292 Hypothetical protein ZC196.3 [Caenorhabditis elegans] ref|NP_505250.1| ZC196.3 [Caenorhabditis elegans] 8.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 3.0E-64
Sequence
Target Sequence 
>C. ELEGANS:181029_AT
taccagtgtttgttatctttttcttgcctgagctagaaaaaacgtcaatttttgcaactc
tgtttttgcaactgttagagtcattatattaccagttcaatgaatttgttcaaacggatt
caaacattctttacatcttcaaaaaaaatcctactgaccgatttgatacgaatttcattt
tttactggttttggatacaatttgaaacattgttaaatgcgagatactatgatctttccc
aaaaaatcaacgaaattttcaatccatcttttccaaaaaattatgaagaaaaatccaatc
agttaaaagacgagatatttccaatattccttgattttttcaattttttagaaatggaga
atcatgccaccataacaaaagacaagtccagcaatgataaatatcaaattattaacattc
cattgaaatgcccaatcagtttcattaaaaatgatgcagcgattgaggagtgccgtcaaa
ttgagcaagaggacgtcacacaaaaatacagcaattgcgcttcggacacagaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCAGTGTTTGTTATCTTTTTCTT 488 651 32 Antisense
TTATCTTTTTCTTGCCTGAGCTAGA 592 679 44 Antisense
CAACTCTGTTTTTGCAACTGTTAGA 502 187 86 Antisense
TAGAGTCATTATATTACCAGTTCAA 285 653 107 Antisense
CAAACATTCTTTACATCTTCAAAAA 438 191 152 Antisense
ATCCTACTGACCGATTTGATACGAA 644 37 179 Antisense
GCGAGATACTATGATCTTTCCCAAA 64 289 250 Antisense
CGAAATTTTCAATCCATCTTTTCCA 186 251 282 Antisense
GGAGAATCATGCCACCATAACAAAA 459 519 387 Antisense
GATGCAGCGATTGAGGAGTGCCGTC 311 413 484 Antisense
GCAATTGCGCTTCGGACACAGAATC 312 323 542 Antisense
Sequence Source Affymetrix Proprietary Database