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[181028_at]

Description ZC266.2 /REP_DB=WormBase Gene ID /WP=CE07591 /TR=Q23253 /GB=AAA96101.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 30      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 253.6
(3)
P 		134.9
(-1.5)
P 		95.1
(-3)
M 		192.3
(0.7)
P 		159
B 239.9
(3)
P 		142.1
(-0.3)
A 		62.1
(-3)
A 		194.4
(1.5)
P 		178
C 207.4
(3)
P 		97.2
(-2.3)
A 		81.7
(-3)
A 		173.2
(1.4)
P 		126
avr 233.6
(3) 		124.7
(-1.2) 		79.6
(-3) 		186.6
(1.2) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 300.4
(3)
P 		97.1
(-1.2)
P 		8.6
(-3)
A 		90.1
(-1.3)
P 		109.4
(-0.9)
P 		110.3
(-0.9)
P 		292
B 187.6
(3)
P 		171.3
(2.1)
P 		77.5
(-3)
A 		87.4
(-2.5)
A 		96.7
(-2)
P 		97.9
(-1.9)
P 		110
C 154.8
(3)
P 		89.4
(-2.7)
M 		96
(-2.1)
A 		107.9
(-1.1)
M 		127.8
(0.7)
P 		85.7
(-3)
A 		69
avr 214.3
(3) 		119.3
(-0.7) 		60.7
(-3) 		95.1
(-1.7) 		111.3
(-1) 		98
(-1.5) 		154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 92.3
(3)
P 		29.3
(-2.6)
P 		24.9
(-3)
M 		28.1
(-2.7)
P 		67
B 76.5
(3)
P 		35.1
(-1)
A 		14.4
(-3)
A 		41.4
(-0.4)
P 		62
C 68.7
(3)
P 		27.9
(-3)
A 		28.5
(-2.9)
A 		29.2
(-2.8)
P 		41
avr 79.2
(3) 		30.8
(-2.1) 		22.6
(-3) 		32.9
(-1.9) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 55.4
(3)
P 		34.5
(0.7)
P 		1.9
(-3)
A 		22.9
(-0.6)
P 		33
(0.5)
P 		26.9
(-0.2)
P 		54
B 65.3
(3)
P 		57
(1.9)
P 		18.8
(-3)
A 		23.1
(-2.4)
A 		39.3
(-0.4)
P 		36.5
(-0.7)
P 		47
C 57.4
(3)
P 		27.3
(-2.1)
M 		24.4
(-2.5)
A 		21.7
(-3)
M 		41.4
(0.3)
P 		28.7
(-1.8)
A 		36
avr 59.4
(3) 		39.6
(0.3) 		15
(-3) 		22.6
(-2) 		37.9
(0.1) 		30.7
(-0.9) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181028_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15033
Sequence Type Exemplar sequence
Representative Public ID ZC266.2 NCBI
Target Description ZC266.2 /REP_DB=WormBase Gene ID /WP=CE07591 /TR=Q23253 /GB=AAA96101.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071864(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071864 NCBI Caenorhabditis elegans ZC266.2 (ZC266.2) mRNA, complete cds. 11/11 None
SNAP00000006416 ENSEMBL cdna:SNAP chromosome:CEL140:V:4694962:4697935:-1 10/11 None
GENEFINDER00000006420 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4694962:4697318:-1 10/11 None
ZC266.2 ENSEMBL cdna:known chromosome:CEL140:V:4696062:4697318:-1 gene:ZC266.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4696061-4697318(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC266.2
Entrez Gene 191135 Entrez gene
SwissProt Q23253 EMBL-EBI
WormBase CE07591 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96101 Hypothetical protein ZC266.2 [Caenorhabditis elegans] ref|NP_504265.1| ZC266.2 [Caenorhabditis elegans] 1.0E-144
blast CAE64175 Hypothetical protein CBG08798 [Caenorhabditis briggsae] 2.0E-92
blast AAA96101 Hypothetical protein ZC266.2 [Caenorhabditis elegans] ref|NP_504265.1| ZC266.2 [Caenorhabditis elegans] 2.0E-74
blast AAA96101 Hypothetical protein ZC266.2 [Caenorhabditis elegans] ref|NP_504265.1| ZC266.2 [Caenorhabditis elegans] 3.0E-74
blast CAE64175 Hypothetical protein CBG08798 [Caenorhabditis briggsae] 1.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504265.1 4 7-24,39-56,181-203,223-242
ZC266.2 4 7-24,39-56,181-203,223-242
SNAP00000006416 3 10-32,129-151,171-190
Sequence
Target Sequence 
>C. ELEGANS:181028_AT
ggactggagcagtctggtcatcctgtgccgaacgtggagattctctggtggtccgaagcg
tagtgttaaagctgccaagcagaagcttagtgtctactcggaagggtgtccatctcctga
ctcgagcctcaaaaagttttcatctgcaaatgtgacaatcagcaagtctagaacttcaaa
tggagaggtgacgatttccagctcttccagctattccagatcaaaacgacgtcaatattt
acgagtccttcgacgctgtctctgcatcacaatcttcgacttgtcaatgaatctaccatc
atatctgctacggctctatctctcgttgtcaaatgagccagtgaccgaggaatgggcgga
aacgtatgaacggttggaagaagtgtcgcaaatcatgtatttcgcacagtttgcgctgaa
tgctctctacctgatttgcattattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTGGAGCAGTCTGGTCATCCTG 142 525 297 Antisense
GTCATCCTGTGCCGAACGTGGAGAT 261 467 313 Antisense
ATTCTCTGGTGGTCCGAAGCGTAGT 464 7 336 Antisense
GTCTACTCGGAAGGGTGTCCATCTC 545 469 388 Antisense
TCTCCTGACTCGAGCCTCAAAAAGT 149 611 409 Antisense
AGAGGTGACGATTTCCAGCTCTTCC 300 69 480 Antisense
ATATTTACGAGTCCTTCGACGCTGT 62 19 531 Antisense
GTCTCTGCATCACAATCTTCGACTT 96 471 554 Antisense
TACCATCATATCTGCTACGGCTCTA 43 649 590 Antisense
GCACAGTTTGCGCTGAATGCTCTCT 419 317 700 Antisense
GCTCTCTACCTGATTTGCATTATTT 8 301 718 Antisense
Sequence Source Affymetrix Proprietary Database