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[181027_at]

Description Y42A5A.2 /REP_DB=WormBase Gene ID /WP=CE20256 /TR=Q9XWZ6 /GB=CAA21485.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 81      4grp_high_8_8 > 55      6grp_highest_nonorm > 90      6grp_total > 83      4grp_total > 56      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 64.9
(-3)
P 		105.2
(-1.1)
P 		189.9
(3)
P 		65.6
(-3)
M 		125
B 78.6
(-3)
P 		110.5
(-1.4)
P 		194.6
(3)
P 		80.3
(-2.9)
P 		116
C 87.3
(-3)
P 		170.1
(2.5)
P 		178.2
(3)
P 		88.9
(-2.9)
P 		91
avr 76.9
(-3) 		128.6
(-0.2) 		187.6
(3) 		78.3
(-2.9) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 60
(-3)
P 		166.9
(0.4)
P 		165.9
(0.3)
P 		250.7
(3)
P 		226.3
(2.2)
P 		96
(-1.9)
P 		191
B 75.7
(-3)
P 		168.8
(0.3)
P 		175.6
(0.5)
P 		223.1
(2.2)
P 		245.5
(3)
P 		146.5
(-0.5)
P 		170
C 65.3
(-3)
P 		169.1
(-0.2)
P 		158.5
(-0.5)
P 		288
(3)
P 		231.7
(1.5)
P 		212.1
(1)
P 		223
avr 67
(-3) 		168.3
(0.3) 		166.7
(0.2) 		253.9
(3) 		234.5
(2.4) 		151.5
(-0.3) 		187
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 23.6
(-0.9)
P 		22.8
(-1)
P 		49.6
(3)
P 		9.6
(-3)
M 		40
B 25.1
(-1.3)
P 		27.3
(-0.8)
P 		45.1
(3)
P 		17.1
(-3)
P 		28
C 28.9
(-1.2)
P 		48.9
(1.3)
P 		62.1
(3)
P 		15
(-3)
P 		47
avr 25.9
(-1.1) 		33
(-0) 		52.3
(3) 		13.9
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 11.1
(-3)
P 		59.4
(2.1)
P 		36.1
(-0.4)
P 		63.6
(2.5)
P 		68.3
(3)
P 		23.4
(-1.7)
P 		57
B 26.3
(-3)
P 		56.2
(-0.6)
P 		42.6
(-1.7)
P 		59.1
(-0.3)
P 		99.8
(3)
P 		54.6
(-0.7)
P 		74
C 24.2
(-3)
P 		51.6
(0.2)
P 		40.3
(-1.1)
P 		57.9
(1)
P 		75
(3)
P 		71
(2.5)
P 		51
avr 20.5
(-3) 		55.7
(0.5) 		39.7
(-1.1) 		60.2
(0.9) 		81
(3) 		49.7
(-0.1) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181027_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14171
Sequence Type Exemplar sequence
Representative Public ID Y42A5A.2 NCBI
Target Description Y42A5A.2 /REP_DB=WormBase Gene ID /WP=CE20256 /TR=Q9XWZ6 /GB=CAA21485.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073420(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073420 NCBI Caenorhabditis elegans Y42A5A.2 (Y42A5A.2) mRNA, complete cds. 11/11 None
SNAP00000034853 ENSEMBL cdna:SNAP chromosome:CEL140:V:11093679:11096227:-1 11/11 None
GENEFINDER00000034861 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11093679:11096227:-1 11/11 None
Y42A5A.2 ENSEMBL cdna:known chromosome:CEL140:V:11093679:11096227:-1 gene:Y42A5A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11093678-11096227(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y42A5A.2
Entrez Gene 189839 Entrez gene
SwissProt Q9XWZ6 EMBL-EBI
WormBase CE20256 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21485 Hypothetical protein Y42A5A.2 [Caenorhabditis elegans] ref|NP_505821.1| Y42A5A.2 [Caenorhabditis elegans] 0.0
blast CAE75151 Hypothetical protein CBG23085 [Caenorhabditis briggsae] 0.0
blast NP_770552 hypothetical protein bll3912 [Bradyrhizobium japonicum USDA 110] dbj|BAC49177.1| bll3912 [Bradyrhizobium japonicum USDA 110] 8.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR001466 EMBL-EBI Beta-lactamase 3.9E-57
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505821.1 1 31-50
Y42A5A.2 1 31-50
SNAP00000034853 1 31-50
GENEFINDER00000034861 1 31-50
Sequence
Target Sequence 
>C. ELEGANS:181027_AT
gagttgtacaacacgagttcccaatattgttccctggtggacgacatatgtattcaaata
ttggctacattttgttagggagaatcatagagaaagtatctggaagaagttatgaggaat
atgcaatggaaaaagtactaaatccaattggagttaatgcaacaattggaaaagaaggaa
attcacaggaagaggtaacatactactcccatgataatgcaaatgcatacacatcatgga
gcactcgtcgattaaattcagctgctggatgggcaatgacagcggaagatgtgacgaagg
tatttcatcatttggaacaatataaactacgtagattccgatggataataactccatcgg
cggtaagatggaattacggaagaggtgttcaattaggaaatgatggaagtctttatcaca
ttggttctctggcaggcactgaagccattggatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTGTACAACACGAGTTCCCAAT 222 395 1361 Antisense
AGTTCCCAATATTGTTCCCTGGTGG 6 61 1376 Antisense
TCCCTGGTGGACGACATATGTATTC 297 597 1391 Antisense
GAGGTAACATACTACTCCCATGATA 432 401 1552 Antisense
GCATACACATCATGGAGCACTCGTC 231 309 1585 Antisense
CACTCGTCGATTAAATTCAGCTGCT 579 197 1602 Antisense
TTCAGCTGCTGGATGGGCAATGACA 560 685 1617 Antisense
GGATAATAACTCCATCGGCGGTAAG 21 453 1703 Antisense
GATGGAAGTCTTTATCACATTGGTT 418 407 1762 Antisense
CACATTGGTTCTCTGGCAGGCACTG 221 195 1777 Antisense
GGCAGGCACTGAAGCCATTGGATAT 624 535 1791 Antisense
Sequence Source Affymetrix Proprietary Database