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[181026_at]

Description C31H1.2 /REP_DB=WormBase Gene ID /WP=CE04123 /TR=Q18337 /GB=AAA83606.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 14
(-1.8)
A 		4.1
(-3)
A 		51.7
(3)
M 		8.9
(-2.4)
A 		48
B 47.1
(3)
A 		42.1
(2.3)
A 		3.8
(-3)
A 		40.3
(2.1)
A 		43
C 41.1
(-0.2)
A 		5.2
(-3)
A 		14.3
(-2.3)
A 		83
(3)
A 		78
avr 34.1
(0.8) 		17.1
(-3) 		23.3
(-1.6) 		44.1
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 50.4
(2.2)
A 		17.2
(-1.4)
A 		57.9
(3)
P 		3
(-3)
A 		44.6
(1.5)
A 		47.9
(1.9)
A 		55
B 3.8
(-3)
A 		14.4
(0.4)
A 		12
(-0.4)
A 		4.6
(-2.7)
A 		21.3
(2.6)
A 		22.7
(3)
A 		19
C 3.3
(-3)
A 		29.4
(0.9)
A 		43.4
(3)
A 		11.8
(-1.7)
A 		22.6
(-0.1)
A 		20.6
(-0.4)
A 		40
avr 19.2
(-0.6) 		20.3
(-0.4) 		37.8
(3) 		6.5
(-3) 		29.5
(1.4) 		30.4
(1.6) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 5.1
(-1)
A 		0.9
(-3)
A 		13.5
(3)
M 		1.3
(-2.8)
A 		13
B 15
(3)
A 		10.4
(1)
A 		0.9
(-3)
A 		8.6
(0.3)
A 		14
C 13.6
(2.8)
A 		1.5
(-3)
A 		5
(-1.3)
A 		14
(3)
A 		13
avr 11.2
(3) 		4.3
(-3) 		6.5
(-1.1) 		8
(0.2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 9.3
(1)
A 		6.1
(-0.5)
A 		12.6
(2.6)
P 		0.8
(-3)
A 		13.5
(3)
A 		11.7
(2.1)
A 		13
B 1.3
(-2.9)
A 		4.8
(-0.1)
A 		2.9
(-1.6)
A 		1.2
(-3)
A 		8.7
(3)
A 		8.5
(2.8)
A 		8
C 1.2
(-3)
A 		9
(1.7)
A 		11.1
(3)
A 		2.4
(-2.3)
A 		7.3
(0.7)
A 		6.9
(0.5)
A 		10
avr 3.9
(-1.3) 		6.6
(0.7) 		8.9
(2.3) 		1.5
(-3) 		9.8
(3) 		9
(2.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181026_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10950
Sequence Type Exemplar sequence
Representative Public ID C31H1.2 NCBI
Target Description C31H1.2 /REP_DB=WormBase Gene ID /WP=CE04123 /TR=Q18337 /GB=AAA83606.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068461(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068461 NCBI Caenorhabditis elegans C31H1.2 (C31H1.2) mRNA, complete cds. 11/11 None
SNAP00000016606 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5791529:5793412:1 11/11 None
GENEFINDER00000016615 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5791295:5793412:1 11/11 None
C31H1.2 ENSEMBL cdna:known chromosome:CEL140:IV:5791295:5793412:1 gene:C31H1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5791300-5793418(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31H1.2
Entrez Gene 183095 Entrez gene
WormBase CE39001 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83606 Hypothetical protein C31H1.2 [Caenorhabditis elegans] ref|NP_500862.2| C31H1.2 [Caenorhabditis elegans] 0.0
blast AAA83606 Hypothetical protein C31H1.2 [Caenorhabditis elegans] ref|NP_500862.2| C31H1.2 [Caenorhabditis elegans] 1.0E-126
blast AAA83606 Hypothetical protein C31H1.2 [Caenorhabditis elegans] ref|NP_500862.2| C31H1.2 [Caenorhabditis elegans] 1.0E-109
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500862.2 1 7-29
C31H1.2 1 7-29
GENEFINDER00000016615 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:181026_AT
gaacttttttcgtatgccacgtgacatatggtaattcgacggcagcagattcagtggttc
aggagggaactgaaatgtgtgaatttacgaagaaacagagtagttgtgtattcattgcaa
ggcattggagagataaagggagctataataaaagtgacaaatatcaggaaaatggttgtg
gaaattgtccagtaacatcgaatgaaatttgtaatttggctcgtccgaaacgtgatggat
atgatgtcaagactgtctgctgttgcaaatctcccaattgtttgacaacactctacaagg
actcagaaattggatggaaaattgaaaatgctcttcgattgaactggacaataattgcat
tctccactgtattctttgttgtcattttttgttcaccgaaaaatattgaaactcttcctc
cagttgtacatag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTTTTTTCGTATGCCACGTGAC 333 349 113 Antisense
GACATATGGTAATTCGACGGCAGCA 83 369 135 Antisense
GACGGCAGCAGATTCAGTGGTTCAG 432 375 150 Antisense
GTAATTTGGCTCGTCCGAAACGTGA 218 459 323 Antisense
GACTGTCTGCTGTTGCAAATCTCCC 685 375 363 Antisense
GCAAATCTCCCAATTGTTTGACAAC 464 317 377 Antisense
GTTTGACAACACTCTACAAGGACTC 384 449 392 Antisense
GGACAATAATTGCATTCTCCACTGT 189 527 458 Antisense
ATTCTCCACTGTATTCTTTGTTGTC 321 11 471 Antisense
TTCTTTGTTGTCATTTTTTGTTCAC 437 691 484 Antisense
AAACTCTTCCTCCAGTTGTACATAG 651 127 521 Antisense
Sequence Source Affymetrix Proprietary Database