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[181025_at]

Description E04A4.3 /REP_DB=WormBase Gene ID /WP=CE16964 /TR=O44473 /GB=AAB92038.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 3
(-3)
A 		9.6
(-2.4)
A 		6.6
(-2.7)
A 		70.5
(3)
A 		68
B 3.2
(-3)
A 		13.3
(3)
A 		10.6
(1.4)
A 		9.1
(0.5)
A 		10
C 21.8
(-0.8)
A 		5.8
(-2.6)
A 		2.1
(-3)
A 		56
(3)
A 		54
avr 9.3
(-2.6) 		9.6
(-2.5) 		6.4
(-3) 		45.2
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 5.8
(-2.9)
A 		5.5
(-3)
A 		56.7
(1.9)
A 		5.2
(-3)
A 		8
(-2.7)
A 		67.8
(3)
A 		63
B 5.5
(-2.6)
A 		40.5
(2.8)
A 		26
(0.5)
A 		2.9
(-3)
A 		4.7
(-2.7)
A 		42.1
(3)
A 		39
C 5.1
(-2.8)
A 		46.6
(3)
A 		8
(-2.4)
A 		12.9
(-1.7)
A 		3.6
(-3)
A 		17.4
(-1.1)
A 		43
avr 5.5
(-3) 		30.9
(1.1) 		30.2
(1) 		7
(-2.7) 		5.4
(-3) 		42.4
(3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.1
(-3)
A 		2.1
(-2.3)
A 		1.7
(-2.6)
A 		10.3
(3)
A 		9
B 1
(-3)
A 		3.3
(3)
A 		2.5
(0.9)
A 		1.9
(-0.7)
A 		2
C 7.2
(1.5)
A 		1.7
(-2.3)
A 		0.7
(-3)
A 		9.4
(3)
A 		9
avr 3.1
(-1.4) 		2.4
(-2.1) 		1.6
(-3) 		7.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.1
(-3)
A 		2
(-2.6)
A 		12.3
(1.4)
A 		1.3
(-2.9)
A 		2.4
(-2.5)
A 		16.5
(3)
A 		15
B 1.9
(-2.6)
A 		13.5
(2.1)
A 		6.3
(-0.8)
A 		0.8
(-3)
A 		1.9
(-2.6)
A 		15.7
(3)
A 		15
C 1.9
(-2.7)
A 		14.2
(3)
A 		2
(-2.6)
A 		2.6
(-2.4)
A 		1.2
(-3)
A 		5.8
(-0.9)
A 		13
avr 1.6
(-3) 		9.9
(1.5) 		6.9
(-0.1) 		1.6
(-3) 		1.8
(-2.9) 		12.7
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181025_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10431
Sequence Type Exemplar sequence
Representative Public ID E04A4.3 NCBI
Target Description E04A4.3 /REP_DB=WormBase Gene ID /WP=CE16964 /TR=O44473 /GB=AAB92038.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068222
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000038148 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4730627:4732741:1 11/11 None
GENEFINDER00000038155 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4730627:4738840:1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4730632-4732747(+) 92.93 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92036 Hypothetical protein E04A4.1 [Caenorhabditis elegans] ref|NP_500625.2| E04A4.1 [Caenorhabditis elegans] 1.0E-170
blast AAK84524 Hypothetical protein F25G6.1 [Caenorhabditis elegans] ref|NP_505211.3| F25G6.1 [Caenorhabditis elegans] 1.0E-96
blast AAB92037 Hypothetical protein E04A4.2 [Caenorhabditis elegans] ref|NP_500624.1| E04A4.2 [Caenorhabditis elegans] 6.0E-91
blast CAC14422 Hypothetical protein Y71A12B.7 [Caenorhabditis elegans] ref|NP_493432.1| Y71A12B.7 [Caenorhabditis elegans] 2.0E-87
blast AAK84524 Hypothetical protein F25G6.1 [Caenorhabditis elegans] ref|NP_505211.3| F25G6.1 [Caenorhabditis elegans] 3.0E-86
blast CAB04507 Hypothetical protein F57G4.2 [Caenorhabditis elegans] ref|NP_507459.1| F57G4.2 [Caenorhabditis elegans] 3.0E-84
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000038155 1 926-948
Sequence
Target Sequence 
>C. ELEGANS:181025_AT
aagtcagctcttaaaatccttcttgaaagaaccactgatggcatacgattcaaagcaagg
atttttctggactctacttttgaacttaccgatggctatgtaactgtcgttatgggcgaa
ctaaatagtttcagaacaaccacatccgacaaaccacgagttattcctctggcatatatg
atccacacggacaaactggcaacaactcatgaagcattcgccaattggctcaccgacaaa
ttcaatgccattggatggggaggtcgtagatgtccgtgtctactagttgatggagaagct
gcgcttgtcgtttatgctgaaaagctagacactgaccttgtcagatgtgatgttcacatc
atgagcctcatgcaacacaagtacggaaagaaagtgttagattctgaccgtaagctccta
tttggagaatgtagaaacgacacgtggaaaagaggattacttggcagtttttctgaagca
gatttcgatgaaagcctcaaaaaagttgaaacgaaattgtcgcccaacgtttcagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCAGCTCTTAAAATCCTTCTTG 425 157 727 Antisense
AGCAAGGATTTTTCTGGACTCTACT 53 77 780 Antisense
GACTCTACTTTTGAACTTACCGATG 562 371 796 Antisense
ACCACATCCGACAAACCACGAGTTA 530 85 865 Antisense
ACGAGTTATTCCTCTGGCATATATG 472 93 882 Antisense
GAAGCATTCGCCAATTGGCTCACCG 590 339 937 Antisense
GATGTCCGTGTCTACTAGTTGATGG 421 409 995 Antisense
AAGCTGCGCTTGTCGTTTATGCTGA 471 149 1022 Antisense
GAGCCTCATGCAACACAAGTACGGA 31 385 1089 Antisense
TTCTGACCGTAAGCTCCTATTTGGA 7 689 1128 Antisense
GAAATTGTCGCCCAACGTTTCAGAC 142 365 1239 Antisense
Sequence Source Affymetrix Proprietary Database