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[181024_at]

Description C31B8.9 /REP_DB=WormBase Gene ID /WP=CE08489 /TR=O16902 /GB=AAG23972.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 8.5
(-1.7)
A 		27.9
(3)
A 		3.1
(-3)
A 		14.7
(-0.2)
A 		25
B 6.7
(-3)
A 		42.3
(3)
A 		7.2
(-2.9)
A 		18
(-1.1)
A 		36
C 5.5
(-0.5)
A 		3
(-3)
A 		3.8
(-2.2)
A 		9
(3)
A 		6
avr 6.9
(-2.3) 		24.4
(3) 		4.7
(-3) 		13.9
(-0.2) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 6.6
(-1.9)
A 		3.9
(-3)
A 		8.5
(-1)
A 		8.1
(-1.2)
A 		18
(3)
A 		4
(-3)
A 		14
B 10.7
(3)
A 		10
(2.3)
A 		8.1
(0.4)
A 		10.5
(2.8)
A 		6.9
(-0.9)
A 		4.8
(-3)
A 		6
C 2.9
(-2.9)
A 		8
(0.9)
A 		10.8
(3)
A 		8.9
(1.6)
A 		2.8
(-3)
A 		3.8
(-2.3)
A 		8
avr 6.7
(0) 		7.3
(0.7) 		9.1
(2.9) 		9.2
(3) 		9.2
(3) 		4.2
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.1
(-0.4)
A 		6.1
(3)
A 		0.8
(-3)
A 		2.1
(-1.5)
A 		5
B 2.1
(-2.7)
A 		10.4
(3)
A 		1.7
(-3)
A 		3.8
(-1.6)
A 		9
C 1.8
(3)
A 		0.9
(-3)
A 		1.3
(-0.3)
A 		1.5
(1)
A 		1
avr 2.3
(-1.7) 		5.8
(3) 		1.3
(-3) 		2.5
(-1.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.2
(-2.7)
A 		1.4
(-2.5)
A 		1.8
(-1.9)
A 		2.1
(-1.5)
A 		5.4
(3)
A 		1
(-3)
A 		4
B 3.7
(3)
A 		3.3
(1.7)
A 		2
(-2.4)
A 		2.8
(0.2)
A 		2.8
(0.2)
A 		1.8
(-3)
A 		2
C 1.1
(-2.3)
A 		2.4
(2)
A 		2.7
(3)
A 		1.8
(0)
A 		0.9
(-3)
A 		1.3
(-1.7)
A 		2
avr 2
(-0.8) 		2.4
(0.8) 		2.2
(0) 		2.2
(0) 		3
(3) 		1.4
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181024_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15766
Sequence Type Exemplar sequence
Representative Public ID C31B8.9 NCBI
Target Description C31B8.9 /REP_DB=WormBase Gene ID /WP=CE08489 /TR=O16902 /GB=AAG23972.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071390
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000035070 ENSEMBL cdna:SNAP chromosome:CEL140:V:2909892:2911662:-1 10/11 None
GENEFINDER00000035076 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2910249:2912828:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071390 4/11 Cross Hyb Matching Probes None
SNAP00000032045 1/11 Cross Hyb Matching Probes None
C31B8.9 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2911002-2912828(-) 67.25 90.63
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503791 C31B8.9 [Caenorhabditis elegans] gb|AAG23972.2| Hypothetical protein C31B8.9 [Caenorhabditis elegans] 2.0E-71
blast NP_503791 C31B8.9 [Caenorhabditis elegans] gb|AAG23972.2| Hypothetical protein C31B8.9 [Caenorhabditis elegans] 9.0E-71
blast AAB70364 Hypothetical protein K06H6.5 [Caenorhabditis elegans] ref|NP_503250.1| K06H6.5 [Caenorhabditis elegans] 3.0E-67
blast AAB70364 Hypothetical protein K06H6.5 [Caenorhabditis elegans] ref|NP_503250.1| K06H6.5 [Caenorhabditis elegans] 1.0E-66
blast CAB02123 Hypothetical protein F55B12.2 [Caenorhabditis elegans] ref|NP_506420.3| F55B12.2 [Caenorhabditis elegans] 2.0E-24
blast CAB02123 Hypothetical protein F55B12.2 [Caenorhabditis elegans] ref|NP_506420.3| F55B12.2 [Caenorhabditis elegans] 5.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.3E-87
Pfam IPR007669 EMBL-EBI Protein of unknown function DUF595 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000035076 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:181024_AT
agaacaatatgcgaccgaccgctggggagaacgggaggacgatggcactttatcgatgga
aaaaatgacaaaattcgcgtttattagacaccctgagagtcgatttgtctcatttttcgt
cgataaatgtattaataccaattcatgttacgattgcaaagatgttagttgtgcggtgaa
aatgatttatgagagactaatgtatcacgtcaaaaaccgccatttgattgacaaagacga
tgagccaacttggtggtttgactggcacgcggcacctcaaacctggaattgtgatttcta
caagtaccttactgattatcatcttatcaaaattggcaccacacaaaaagatcgaagatt
tgcgatgaagcagttgcagaaggctctaaagctggctaacgtcgaagatgaatacgccag
gaaaattgctgatgacacgctgaagagtgacacacgacatggaactcataagtctgattg
gagcaagaaaattttggagcaggaaattaatttttttcgccaatacgtgtttctcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAACAATATGCGACCGACCGCTGG 106 73 603 Antisense
GACCGACCGCTGGGGAGAACGGGAG 564 379 615 Antisense
AACGGGAGGACGATGGCACTTTATC 569 119 632 Antisense
AATTCGCGTTTATTAGACACCCTGA 599 177 674 Antisense
GACACCCTGAGAGTCGATTTGTCTC 361 367 689 Antisense
GATTTGTCTCATTTTTCGTCGATAA 669 427 704 Antisense
TGTATCACGTCAAAAACCGCCATTT 201 561 803 Antisense
ACTTGGTGGTTTGACTGGCACGCGG 16 105 850 Antisense
GCGGCACCTCAAACCTGGAATTGTG 586 293 871 Antisense
GAAGGCTCTAAAGCTGGCTAACGTC 65 331 981 Antisense
TTTTCGCCAATACGTGTTTCTCAAA 446 675 1116 Antisense
Sequence Source Affymetrix Proprietary Database