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[181023_s_at]

Description T11F9.12 /REP_DB=WormBase Gene ID /WP=CE18953 /TR=Q22402 /GB=CAA98537.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 22      4grp_high_8_8 > 58      6grp_highest_nonorm > 61      6grp_total > 22      4grp_total > 61      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 310.6
(3)
P 		203.3
(-1.3)
P 		261
(1)
P 		162.5
(-3)
A 		148
B 361.6
(3)
P 		308.5
(1.5)
P 		329.5
(2.1)
P 		149.9
(-3)
P 		212
C 277.7
(1.9)
P 		216.3
(-1)
P 		301.6
(3)
P 		175
(-3)
P 		127
avr 316.6
(3) 		242.7
(0.1) 		297.4
(2.3) 		162.5
(-3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 354
1 2 3 4 5 6 range
A 477.4
(3)
P 		477.4
(3)
P 		372.1
(1.1)
P 		360.6
(0.9)
P 		466.8
(2.8)
P 		149.8
(-3)
P 		328
B 470.9
(2.3)
P 		436.7
(1.6)
P 		503.7
(3)
P 		470.5
(2.3)
P 		393.4
(0.7)
P 		211
(-3)
P 		293
C 372.8
(0.4)
P 		455.8
(2.2)
P 		494.7
(3)
P 		406.8
(1.1)
P 		396.9
(0.9)
P 		217.5
(-3)
P 		277
avr 440.4
(2.6) 		456.6
(3) 		456.8
(3) 		412.6
(2) 		419
(2.1) 		192.8
(-3) 		264
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 113.1
(3)
P 		44.1
(-1.6)
P 		68.2
(-0)
P 		23.8
(-3)
A 		89
B 115.3
(3)
P 		76.2
(0.2)
P 		76.3
(0.2)
P 		31.9
(-3)
P 		83
C 91.9
(2)
P 		62.2
(-0.4)
P 		105.1
(3)
P 		29.5
(-3)
P 		76
avr 106.8
(3) 		60.8
(-0.5) 		83.2
(1.2) 		28.4
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 88
(-0.7)
P 		169.8
(3)
P 		81
(-1)
P 		91.5
(-0.5)
P 		140.9
(1.7)
P 		36.5
(-3)
P 		133
B 163.9
(3)
P 		145.4
(1.7)
P 		122.3
(0.1)
P 		124.6
(0.2)
P 		159.8
(2.7)
P 		78.7
(-3)
P 		85
C 138.2
(2.9)
P 		139.1
(3)
P 		125.9
(1.8)
P 		81.8
(-2.2)
P 		128.4
(2)
P 		72.8
(-3)
P 		66
avr 130
(1.6) 		151.4
(3) 		109.7
(0.2) 		99.3
(-0.5) 		143
(2.4) 		62.7
(-3) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181023_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13136
Sequence Type Exemplar sequence
Representative Public ID T11F9.12 NCBI
Target Description T11F9.12 /REP_DB=WormBase Gene ID /WP=CE18953 /TR=Q22402 /GB=CAA98537.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073515(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073515 NCBI Caenorhabditis elegans T11F9.12 (T11F9.12) mRNA, complete cds. 11/11 None
SNAP00000013932 ENSEMBL cdna:SNAP chromosome:CEL140:V:11496397:11497849:-1 11/11 None
GENEFINDER00000013938 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11496397:11498011:-1 11/11 None
T11F9.12 ENSEMBL cdna:known chromosome:CEL140:V:11496146:11498962:-1 gene:T11F9.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11496396-11498952(-) 92.11 100.0
Public Domain and Genome References
Gene Title
Ensembl T11F9.12
Entrez Gene 179579 Entrez gene
SwissProt Q22402 EMBL-EBI
WormBase CE18953 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98537 Hypothetical protein T11F9.12 [Caenorhabditis elegans] emb|CAA20938.1| Hypothetical protein T11F9.12 [Caenorhabditis elegans] ref|NP_505916.1| T11F9.12 [Caenorhabditis elegans] 0.0
blast CAE75262 Hypothetical protein CBG23225 [Caenorhabditis briggsae] 1.0E-158
blast CAE75262 Hypothetical protein CBG23225 [Caenorhabditis briggsae] 1.0E-157
blast NP_418075 involved in lipopolysaccharide biosynthesis [Escherichia coli K12] gb|AAC76642.1| involved in lipopolysaccharide biosynthesis [Escherichia coli K12] gb|AAB18595.1| alternate gene name yibB [Escherichia coli] sp|P25666|HTRL_ECOLI Protein htrL gb|AAA91059.1| 33,991 dalton protein 2.0E-16
blast NP_418075 involved in lipopolysaccharide biosynthesis [Escherichia coli K12] gb|AAC76642.1| involved in lipopolysaccharide biosynthesis [Escherichia coli K12] gb|AAB18595.1| alternate gene name yibB [Escherichia coli] sp|P25666|HTRL_ECOLI Protein htrL gb|AAA91059.1| 33,991 dalton protein 3.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505916.1 3 5-27,241-263,265-283
T11F9.12 3 5-27,241-263,265-283
GENEFINDER00000013938 2 15-34,36-58
Sequence
Target Sequence 
>C. ELEGANS:181023_S_AT
gttggatgatttgccgttgtacagttatattaatgaagcaaagaaaattatcaatgatga
gttgaacaatgaaactttctatagaactattgcggatcttgatatgaagactcatccaga
atccatcagtgctgaatataacattgttgtcaactcaaaaactcatttcttacataatgt
aacaatggagaatcctttcaattcggaacattttgtctggcttgatgcgggatatggtca
cgccaatgagaatcacttcccatatagttataaatggcaacctgctcttcctgatggaaa
gatttcgttgatcaaagtaacaccatattttgatgaagtgtccagctatgatctcaagag
attatatcgtaagaatgtagcattgttgagtggaggatttattgcaggagataaacacgc
aattggacaactccattcaataattcaccgcaaatttatccaattgatctaccaaaatca
tgtagatgatgatcaaactttacttacacttgccgttaactcatttccccaacttttcca
tattgttcttggcgattggtttgatgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGATGATTTGCCGTTGTACAGT 180 437 1470 Antisense
GACTCATCCAGAATCCATCAGTGCT 704 373 1578 Antisense
GGAGAATCCTTTCAATTCGGAACAT 577 517 1656 Antisense
GAACATTTTGTCTGGCTTGATGCGG 385 351 1675 Antisense
GATGCGGGATATGGTCACGCCAATG 499 413 1693 Antisense
CACGCCAATGAGAATCACTTCCCAT 302 201 1708 Antisense
CAACCTGCTCTTCCTGATGGAAAGA 392 187 1747 Antisense
GAAGTGTCCAGCTATGATCTCAAGA 410 335 1804 Antisense
ACAACTCCATTCAATAATTCACCGC 238 113 1896 Antisense
TTCCCCAACTTTTCCATATTGTTCT 247 697 1994 Antisense
TGTTCTTGGCGATTGGTTTGATGCT 686 561 2013 Antisense
Sequence Source Affymetrix Proprietary Database