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[181022_s_at]

Description E02H9.3 /REP_DB=WormBase Gene ID /WP=CE09120 /TR=Q9TZ97 /GB=AAC68769.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 53      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 61      6grp_total > 30      4grp_total > 07      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 264
1 2 3 4 range
A 331.5
(1.1)
P 		225.8
(-3)
P 		339.4
(1.4)
P 		379.9
(3)
P 		154
B 433
(3)
P 		302.7
(-3)
P 		351.4
(-0.8)
P 		427.2
(2.7)
P 		130
C 489.8
(3)
P 		295.7
(-3)
P 		395.4
(0.1)
P 		409.2
(0.5)
P 		194
avr 418.1
(3) 		274.7
(-3) 		362.1
(0.7) 		405.4
(2.5) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 432
1 2 3 4 5 6 range
A 415.7
(-0.4)
P 		586.5
(2)
P 		658
(3)
P 		564.9
(1.7)
P 		226.3
(-3)
P 		312.5
(-1.8)
P 		432
B 349
(-1.5)
P 		487.1
(0.6)
P 		642.6
(3)
P 		379.4
(-1)
P 		250.4
(-3)
P 		418.5
(-0.4)
P 		392
C 321.9
(-2.1)
P 		580.8
(3)
P 		505.1
(1.5)
P 		365.8
(-1.3)
P 		278.2
(-3)
P 		364
(-1.3)
P 		303
avr 362.2
(-1.1) 		551.5
(2.1) 		601.9
(3) 		436.7
(0.2) 		251.6
(-3) 		365
(-1.1) 		350
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 120.7
(3)
P 		49
(-3)
P 		88.7
(0.3)
P 		55.6
(-2.4)
P 		72
B 138.1
(3)
P 		74.8
(-3)
P 		81.4
(-2.4)
P 		91
(-1.5)
P 		63
C 162.1
(3)
P 		85
(-2)
P 		137.8
(1.4)
P 		69
(-3)
P 		93
avr 140.3
(3) 		69.6
(-3) 		102.6
(-0.2) 		71.9
(-2.8) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 76.6
(-2.6)
P 		208.6
(3)
P 		143.3
(0.2)
P 		143.3
(0.2)
P 		68.3
(-3)
P 		76.1
(-2.7)
P 		140
B 121.4
(-1)
P 		162.1
(3)
P 		156.1
(2.4)
P 		100.5
(-3)
P 		101.7
(-2.9)
P 		156
(2.4)
P 		62
C 119.3
(-0.4)
P 		177.2
(3)
P 		128.6
(0.2)
P 		73.6
(-3)
P 		90
(-2.1)
P 		121.9
(-0.2)
P 		104
avr 105.8
(-1.8) 		182.6
(3) 		142.7
(0.5) 		105.8
(-1.8) 		86.7
(-3) 		118
(-1) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181022_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7621
Sequence Type Exemplar sequence
Representative Public ID E02H9.3 NCBI
Target Description E02H9.3 /REP_DB=WormBase Gene ID /WP=CE09120 /TR=Q9TZ97 /GB=AAC68769.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026064(11), NM_001026063(11), NM_001027914(11), NM_001027913(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026064 NCBI Caenorhabditis elegans E02H9.3b (E02H9.3) mRNA, complete cds. 11/11 None
NM_001026063 NCBI Caenorhabditis elegans E02H9.3a (E02H9.3) mRNA, complete cds. 11/11 None
NM_001027914 NCBI Caenorhabditis elegans C49A9.9b (C49A9.9) mRNA, complete cds. 11/11 None
NM_001027913 NCBI Caenorhabditis elegans C49A9.9a (C49A9.9) mRNA, complete cds. 11/11 None
GENEFINDER00000038960 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2456759:2466788:1 11/11 None
SNAP00000038956 ENSEMBL cdna:SNAP chromosome:CEL140:III:2460588:2469431:1 11/11 None
SNAP00000001923 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6217419:6219149:1 11/11 None
GENEFINDER00000001929 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6217434:6219149:1 11/11 None
E02H9.3b.1 ENSEMBL cdna:known chromosome:CEL140:III:2461897:2465049:1 gene:E02H9.3 11/11 None
E02H9.3b.2 ENSEMBL cdna:known chromosome:CEL140:III:2461899:2465049:1 gene:E02H9.3 11/11 None
E02H9.3a ENSEMBL cdna:known chromosome:CEL140:III:2461899:2464864:1 gene:E02H9.3 11/11 None
C49A9.9b ENSEMBL cdna:known chromosome:CEL140:IV:6217356:6219435:1 gene:C49A9.9 11/11 None
C49A9.9a ENSEMBL cdna:known chromosome:CEL140:IV:6217419:6219433:1 gene:C49A9.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2461994-2464864(+) 100.0 100.0
chrIV:6218070-6219155(+) 66.97 66.97
Public Domain and Genome References
Ensembl E02H9.3
C49A9.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU05582 Hypothetical protein E02H9.3b [Caenorhabditis elegans] ref|NP_001021235.1| E02H9.3b [Caenorhabditis elegans] 0.0
blast AAU05581 Hypothetical protein E02H9.3a [Caenorhabditis elegans] ref|NP_001021234.1| E02H9.3a [Caenorhabditis elegans] 0.0
blast T33601 hypothetical protein E02H9.3 - Caenorhabditis elegans 0.0
blast AAO61432 Hypothetical protein C49A9.9b [Caenorhabditis elegans] ref|NP_001023085.1| C49A9.9b [Caenorhabditis elegans] 0.0
blast AAK29792 Hypothetical protein C49A9.9a [Caenorhabditis elegans] ref|NP_001023084.1| C49A9.9a [Caenorhabditis elegans] 0.0
blast T32521 hypothetical protein C49A9.4 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 3.0E-78
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 3.2E-14
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 1.2E-77
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 5.7E-72
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 1.0E-77
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 1.0E-77
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 3.0E-78
Sequence
Target Sequence 
>C. ELEGANS:181022_S_AT
gttgctggctcgggatttcctaaacctcccaaaaaggaggaaaaaatcgttggtactgga
ttccaaccaccgaaaaaagataaaaactctgaaaagcaaggacaaattgttggcgaagga
tttacgacttcgcaaacaaaagaggaaaagcagcgggccgttgtcacaagaattgacgaa
aaacgacctggtttatattacttgtggaatctcgattcaaaaactgaaggattgttcaaa
actacaaagtatgttttggcactgggtcatcactttgaaggaactttccagaaacaggaa
gatggaagatgtgtttgtaaagagtacataagacaaataactgagcttttgcacggcggc
atcaatgataaagagaaactttttttgacggttaaaataaccaaatttacaccggcagga
gtcaatcaaaaattctcaactggaacagcaaagtacatcggagaattgctggaaggacgc
actgatgaaactaaattaactgctggatgcataggaaaaaccgtcaagattgaacgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCTGGCTCGGGATTTCCTAAAC 130 439 742 Antisense
GAAGGATTTACGACTTCGCAAACAA 670 327 856 Antisense
GGAAAAGCAGCGGGCCGTTGTCACA 633 527 885 Antisense
AGTATGTTTTGGCACTGGGTCATCA 486 61 989 Antisense
AATAACTGAGCTTTTGCACGGCGGC 398 171 1077 Antisense
GCTTTTGCACGGCGGCATCAATGAT 288 305 1086 Antisense
ATAACCAAATTTACACCGGCAGGAG 466 25 1138 Antisense
TTTACACCGGCAGGAGTCAATCAAA 303 671 1147 Antisense
GTACATCGGAGAATTGCTGGAAGGA 6 461 1194 Antisense
GAAACTAAATTAACTGCTGGATGCA 279 355 1228 Antisense
GAAAAACCGTCAAGATTGAACGCCG 393 335 1256 Antisense
Sequence Source Affymetrix Proprietary Database