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[181021_at]

Description F59D6.1 /REP_DB=WormBase Gene ID /WP=CE11476 /TR=O16344 /GB=AAB65876.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 39      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 268
1 2 3 4 range
A 259.6
(3)
P 		74.6
(-1.4)
A 		6.2
(-3)
A 		181.3
(1.1)
M 		253
B 271.7
(3)
P 		59.7
(-2.4)
A 		37
(-3)
A 		44
(-2.8)
M 		235
C 273.8
(3)
P 		102.4
(-1.9)
A 		62.1
(-3)
A 		124.6
(-1.2)
P 		212
avr 268.4
(3) 		78.9
(-1.9) 		35.1
(-3) 		116.6
(-0.9) 		233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 282
1 2 3 4 5 6 range
A 263.4
(3)
P 		175.3
(0.5)
P 		96.5
(-1.7)
P 		50.9
(-3)
P 		65.8
(-2.6)
M 		64
(-2.6)
A 		213
B 315.3
(3)
P 		133.1
(-1.3)
P 		158.4
(-0.7)
P 		109.6
(-1.8)
A 		59
(-3)
A 		66.6
(-2.8)
A 		256
C 313.5
(3)
P 		145
(-0.6)
P 		119.7
(-1.1)
P 		96.7
(-1.6)
A 		32.9
(-3)
A 		68
(-2.2)
A 		281
avr 297.4
(3) 		151.1
(-0.6) 		124.9
(-1.2) 		85.7
(-2.2) 		52.6
(-3) 		66.2
(-2.7) 		245
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 94.5
(3)
P 		16.2
(-2.1)
A 		1.6
(-3)
A 		26.5
(-1.4)
M 		93
B 86.6
(3)
P 		14.8
(-2.5)
A 		8.6
(-3)
A 		9.4
(-2.9)
M 		78
C 90.6
(3)
P 		29.4
(-2.3)
A 		21.6
(-2.9)
A 		21
(-3)
P 		70
avr 90.6
(3) 		20.1
(-2.3) 		10.6
(-3) 		19
(-2.4) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 48.6
(1.3)
P 		62.3
(3)
P 		21
(-2)
P 		12.9
(-3)
P 		19.8
(-2.2)
M 		15.6
(-2.7)
A 		49
B 109.7
(3)
P 		44.3
(-1.6)
P 		38.5
(-2)
P 		29
(-2.6)
A 		24
(-3)
A 		24.8
(-2.9)
A 		86
C 116.2
(3)
P 		44.3
(-1.1)
P 		30.5
(-1.9)
P 		19.5
(-2.5)
A 		10.6
(-3)
A 		22.8
(-2.3)
A 		106
avr 91.5
(3) 		50.3
(-0.4) 		30
(-2) 		20.5
(-2.8) 		18.1
(-3) 		21.1
(-2.8) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181021_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15451
Sequence Type Exemplar sequence
Representative Public ID F59D6.1 NCBI
Target Description F59D6.1 /REP_DB=WormBase Gene ID /WP=CE11476 /TR=O16344 /GB=AAB65876.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071430(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071430 NCBI Caenorhabditis elegans F59D6.1 (F59D6.1) mRNA, complete cds. 11/11 None
SNAP00000018893 ENSEMBL cdna:SNAP chromosome:CEL140:V:3051415:3051814:1 11/11 None
GENEFINDER00000018899 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3051294:3051814:1 11/11 None
F59D6.1 ENSEMBL cdna:known chromosome:CEL140:V:3051415:3051814:1 gene:F59D6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3051414-3051814(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59D6.1
Entrez Gene 186612 Entrez gene
SwissProt O16344 EMBL-EBI
WormBase CE11476 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65876 Hypothetical protein F59D6.1 [Caenorhabditis elegans] ref|NP_503831.1| F59D6.1 [Caenorhabditis elegans] 2.0E-61
blast AAY86251 Hypothetical protein K01A12.4 [Caenorhabditis elegans] ref|NP_741863.1| M02D8.6 [Caenorhabditis elegans] gb|AAN72428.1| Hypothetical protein M02D8.6 [Caenorhabditis elegans] 1.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000018899 1 15-37
Sequence
Target Sequence 
>C. ELEGANS:181021_AT
ctattttccaccaccgattgcaaaaaatgcgtgaaaggtgacaacaacaagagtgtccac
ttggaggccggatatgactactgttactcaagattgaatatcaagacaaatgttatgtcc
tatggaggaatgaccggaccaacaaccgtcttcaatgaggacccgaacccgagaaatctc
attaaaacgttctgttttttaaatatagaagccggatccgatgagctaacctgttattgc
aaaccatcaagatgcaaccacaaaaccaatcctgaagacttcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATTTTCCACCACCGATTGCAAAA 141 223 55 Antisense
AAGAGTGTCCACTTGGAGGCCGGAT 532 149 103 Antisense
GAGGCCGGATATGACTACTGTTACT 598 405 118 Antisense
GAATGACCGGACCAACAACCGTCTT 576 315 182 Antisense
CAACCGTCTTCAATGAGGACCCGAA 454 185 197 Antisense
GGACCCGAACCCGAGAAATCTCATT 128 523 213 Antisense
GAAATCTCATTAAAACGTTCTGTTT 161 363 227 Antisense
AAGCCGGATCCGATGAGCTAACCTG 564 147 263 Antisense
GCTAACCTGTTATTGCAAACCATCA 218 303 279 Antisense
ATGCAACCACAAAACCAATCCTGAA 327 43 306 Antisense
CAAAACCAATCCTGAAGACTTCCTC 127 189 315 Antisense
Sequence Source Affymetrix Proprietary Database