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[181019_at]

Description F31A9.1 /REP_DB=WormBase Gene ID /WP=CE07162 /TR=Q19925 /GB=AAB00606.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 3
(-3)
A 		3
(-3)
A 		4.1
(-2.9)
A 		60.5
(3)
A 		58
B 26.7
(3)
A 		5.5
(-2.4)
A 		3
(-3)
A 		5.4
(-2.4)
A 		24
C 3.1
(-2.9)
A 		3.9
(-2.8)
A 		2.4
(-3)
A 		52.8
(3)
A 		50
avr 10.9
(-1.7) 		4.1
(-2.9) 		3.2
(-3) 		39.6
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 3.7
(2)
A 		3.2
(-0.5)
A 		3.2
(-0.5)
A 		2.7
(-3)
A 		3.4
(0.5)
A 		3.9
(3)
A 		1
B 3.3
(-0.4)
A 		2
(-3)
A 		5
(3)
A 		2.9
(-1.2)
A 		2.3
(-2.4)
A 		3.2
(-0.6)
A 		3
C 1.8
(-1.4)
A 		1.2
(-3)
A 		3.2
(2.5)
A 		3.4
(3)
A 		1.4
(-2.5)
A 		1.6
(-1.9)
A 		2
avr 2.9
(-0.2) 		2.1
(-3) 		3.8
(3) 		3
(0.2) 		2.4
(-1.9) 		2.9
(-0.2) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.1
(-2.7)
A 		0.7
(-3)
A 		1.1
(-2.7)
A 		8.9
(3)
A 		8
B 8.5
(3)
A 		1.4
(-2.5)
A 		0.7
(-3)
A 		1.1
(-2.7)
A 		8
C 1
(-2.9)
A 		1.1
(-2.8)
A 		0.8
(-3)
A 		8.9
(3)
A 		8
avr 3.5
(-0.1) 		1.1
(-2.8) 		0.9
(-3) 		6.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.1
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		1
(1.5)
A 		0.9
(0)
A 		0
B 1.2
(3)
A 		0.7
(-3)
A 		1.2
(3)
A 		0.8
(-1.8)
A 		0.9
(-0.6)
A 		1.2
(3)
A 		1
C 0.7
(1.5)
A 		0.4
(-3)
A 		0.8
(3)
A 		0.7
(1.5)
A 		0.5
(-1.5)
A 		0.5
(-1.5)
A 		0
avr 0.9
(3) 		0.7
(-3) 		0.9
(3) 		0.7
(-3) 		0.8
(0) 		0.9
(3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181019_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18556
Sequence Type Exemplar sequence
Representative Public ID F31A9.1 NCBI
Target Description F31A9.1 /REP_DB=WormBase Gene ID /WP=CE07162 /TR=Q19925 /GB=AAB00606.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075929(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075929 NCBI Caenorhabditis elegans F31A9.1 (F31A9.1) mRNA, complete cds. 11/11 None
F31A9.1 ENSEMBL cdna:known chromosome:CEL140:X:1797400:1797831:1 gene:F31A9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021822 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1797399-1797831(+) 16.53 100.0
Public Domain and Genome References
Gene Title
Ensembl F31A9.1
Entrez Gene 185137 Entrez gene
SwissProt Q19925 EMBL-EBI
WormBase CE07162 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00606 Hypothetical protein F31A9.1 [Caenorhabditis elegans] ref|NP_508330.1| F31A9.1 [Caenorhabditis elegans] 3.0E-63
blast AAA81462 Hypothetical protein C24A3.8 [Caenorhabditis elegans] ref|NP_509522.1| C24A3.8 [Caenorhabditis elegans] 2.0E-19
blast CAB03100 Hypothetical protein F44F1.2 [Caenorhabditis elegans] ref|NP_493326.1| F44F1.2 [Caenorhabditis elegans] 2.0E-18
Sequence
Target Sequence 
>C. ELEGANS:181019_AT
tgggacaagctgactactcgtgcgagggggcttcttctaggttttttggaactaaacctg
tcgcgaagtcgattgattcatcgttattacgtaacacatgctcttcaatactcaacttca
tccgtgcaatcaatgacaactactctgtaaaaggacgacggaaaaaaaaccccaattcaa
actaccgccaaaaggaggattcaaggtgcatgagatctcgccacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGACAAGCTGACTACTCGTGCGA 254 555 14 Antisense
ACTACTCGTGCGAGGGGGCTTCTTC 633 101 26 Antisense
GGAACTAAACCTGTCGCGAAGTCGA 492 527 61 Antisense
GTCGCGAAGTCGATTGATTCATCGT 506 475 73 Antisense
TTATTACGTAACACATGCTCTTCAA 31 679 97 Antisense
ACACATGCTCTTCAATACTCAACTT 547 111 107 Antisense
TACTCAACTTCATCCGTGCAATCAA 53 647 122 Antisense
GTGCAATCAATGACAACTACTCTGT 227 481 137 Antisense
CAACTACTCTGTAAAAGGACGACGG 337 189 150 Antisense
ACTACCGCCAAAAGGAGGATTCAAG 323 95 194 Antisense
CAAGGTGCATGAGATCTCGCCACGA 363 183 215 Antisense
Sequence Source Affymetrix Proprietary Database