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[181018_s_at]

Description Y44F5A.1 /REP_DB=WormBase Gene ID /WP=CE16634 /TR=O45938 /GB=CAA15980.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 68      4grp_high_8_8 > 56      6grp_total > 79      4grp_total > 63      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 91.1
(3)
P 		44.7
(-1.6)
P 		64.6
(0.4)
P 		30.9
(-3)
A 		60
B 64.1
(3)
A 		35.1
(-3)
P 		44
(-1.2)
P 		45.5
(-0.8)
A 		29
C 130.6
(3)
P 		61.5
(-3)
P 		127.1
(2.7)
P 		63.4
(-2.8)
P 		69
avr 95.3
(3) 		47.1
(-2.9) 		78.6
(0.9) 		46.6
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 48.6
(-3)
A 		91
(2.1)
P 		52.7
(-2.5)
P 		52.8
(-2.5)
P 		81.3
(0.9)
P 		98.7
(3)
P 		50
B 82.8
(-1.7)
P 		138.1
(3)
P 		67.9
(-3)
P 		89
(-1.2)
P 		86.7
(-1.4)
P 		134.1
(2.7)
P 		70
C 75.3
(-0.7)
P 		87
(-0)
P 		61.4
(-1.4)
P 		31.6
(-3)
A 		73.7
(-0.8)
P 		144.1
(3)
P 		113
avr 68.9
(-2) 		105.4
(1.2) 		60.7
(-2.7) 		57.8
(-3) 		80.6
(-1) 		125.6
(3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 33.2
(3)
P 		9.7
(-1.9)
P 		16.9
(-0.4)
P 		4.5
(-3)
A 		29
B 20.4
(3)
A 		8.7
(-3)
P 		10.2
(-2.2)
P 		9.7
(-2.5)
A 		12
C 43.2
(2.8)
P 		17.7
(-1.8)
P 		44.3
(3)
P 		10.7
(-3)
P 		34
avr 32.3
(3) 		12
(-2.1) 		23.8
(0.9) 		8.3
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 9
(-3)
A 		32.4
(3)
P 		11.5
(-2.4)
P 		13.4
(-1.9)
P 		24.5
(1)
P 		24
(0.8)
P 		23
B 28.8
(-0.8)
P 		46
(2.3)
P 		16.5
(-3)
P 		23.6
(-1.7)
P 		35.2
(0.3)
P 		50
(3)
P 		34
C 27.9
(0.1)
P 		26.5
(-0.1)
P 		15.6
(-1.7)
P 		6.4
(-3)
A 		23.9
(-0.5)
P 		48.2
(3)
P 		42
avr 21.9
(-1.3) 		35
(1.7) 		14.5
(-3) 		14.5
(-3) 		27.9
(0.1) 		40.7
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181018_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6129
Sequence Type Exemplar sequence
Representative Public ID Y44F5A.1 NCBI
Target Description Y44F5A.1 /REP_DB=WormBase Gene ID /WP=CE16634 /TR=O45938 /GB=CAA15980.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065450(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065450 NCBI Caenorhabditis elegans Y44F5A.1 (Y44F5A.1) mRNA, complete cds. 11/11 None
SNAP00000038127 ENSEMBL cdna:SNAP chromosome:CEL140:III:4245017:4247641:-1 11/11 None
GENEFINDER00000038131 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4245017:4247641:-1 11/11 None
Y44F5A.1 ENSEMBL cdna:known chromosome:CEL140:III:4244827:4247641:-1 gene:Y44F5A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4245016-4247641(-) 96.44 100.0
Public Domain and Genome References
Gene Title
Ensembl Y44F5A.1
Entrez Gene 175547 Entrez gene
SwissProt O45938 EMBL-EBI
WormBase CE16634 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA15980 Hypothetical protein Y44F5A.1 [Caenorhabditis elegans] ref|NP_497851.1| Y44F5A.1 [Caenorhabditis elegans] gb|AAG50210.1| 3E324 [Caenorhabditis elegans] 0.0
blast CAE57015 Hypothetical protein CBG24890 [Caenorhabditis briggsae] 1.0E-139
blast XP_783950 PREDICTED: similar to WD repeat domain 55 [Strongylocentrotus purpuratus] 3.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.073
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.14
Sequence
Target Sequence 
>C. ELEGANS:181018_S_AT
gtgaactaatgcactcggagctctattcagtttgtggaacaaatcgatcggtatatgttg
gaggagaagatggatatgttgaagtatttaatttaaatgaatatggaaatttgttggaaa
gagttgaaagtggttttgaaatgggtgtaaatggaattgttgaattgagaagtggtttat
tgggattaacaagtcaaggaagtaatcgaatgagattattgaatgttcaaccatcgaaaa
gattaggatatgctggatatcatggtgatgagaagagtgatgatgatggtattgatgcta
ttacgatttcaactgacaaatcaacagtttttacaatgatctcaatgagctgtacaatca
aaaaatgggatatgggaccaattatcgatgagattccgattcttagagctcaggatgcaa
aatcgaagaaaatgagaaaaactgaaggatttttcgatggattagttggaccgaaaaacg
attcagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAACTAATGCACTCGGAGCTCTA 664 481 557 Antisense
CTAATGCACTCGGAGCTCTATTCAG 456 227 562 Antisense
AAATCGATCGGTATATGTTGGAGGA 123 119 597 Antisense
ATTGAATGTTCAACCATCGAAAAGA 80 3 774 Antisense
GATGCTATTACGATTTCAACTGACA 46 411 850 Antisense
GATCTCAATGAGCTGTACAATCAAA 67 419 894 Antisense
ATATGGGACCAATTATCGATGAGAT 345 21 926 Antisense
GATGAGATTCCGATTCTTAGAGCTC 280 411 943 Antisense
CCGATTCTTAGAGCTCAGGATGCAA 160 265 952 Antisense
GGATTTTTCGATGGATTAGTTGGAC 659 509 1003 Antisense
AGTTGGACCGAAAAACGATTCAGAT 435 63 1020 Antisense
Sequence Source Affymetrix Proprietary Database