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[181017_at]

Description C16A3.4 /REP_DB=WormBase Gene ID /WP=CE04004 /TR=Q18037 /GB=AAB47598.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 66      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 67      6grp_total > 57      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Da      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6667
1 2 3 4 range
A 2351.4
(-2)
P 		1204.5
(-3)
P 		1409.2
(-2.8)
P 		7866.9
(3)
P 		6662
B 2295.6
(-2)
P 		1260.3
(-3)
P 		1437.4
(-2.8)
P 		7498.4
(3)
P 		6238
C 2012.6
(-2.2)
P 		1199.6
(-3)
P 		1388.1
(-2.8)
P 		7247.4
(3)
P 		6048
avr 2219.9
(-2.1) 		1221.5
(-3) 		1411.6
(-2.8) 		7537.6
(3) 		6316

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 630
1 2 3 4 5 6 range
A 1677.9
(-1.6)
P 		1632
(-2.2)
P 		1564.3
(-3)
P 		1833.1
(0.2)
P 		1560.4
(-3)
P 		2074.9
(3)
P 		515
B 1864.4
(0.5)
P 		1542.4
(-2.7)
P 		1682.8
(-1.3)
P 		1516.2
(-3)
P 		1665.6
(-1.5)
P 		2114.3
(3)
P 		598
C 1697.3
(-1)
P 		1648.1
(-1.5)
P 		1614.7
(-1.8)
P 		1721.7
(-0.8)
P 		1487
(-3)
P 		2116.7
(3)
P 		630
avr 1746.5
(-1) 		1607.5
(-2.6) 		1620.6
(-2.4) 		1690.3
(-1.7) 		1571
(-3) 		2102
(3) 		531
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1336
1 2 3 4 range
A 856.2
(1)
P 		261.5
(-3)
P 		368.4
(-2.3)
P 		1151.6
(3)
P 		890
B 732.1
(-1)
P 		311.3
(-3)
P 		333.1
(-2.9)
P 		1597.9
(3)
P 		1287
C 666.2
(-0.8)
P 		344.9
(-3)
P 		483.8
(-2)
P 		1222
(3)
P 		877
avr 751.5
(-0.4) 		305.9
(-3) 		395.1
(-2.5) 		1323.8
(3) 		1018

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 479
1 2 3 4 5 6 range
A 309.3
(-3)
P 		580.4
(3)
P 		340.7
(-2.3)
P 		464.9
(0.4)
P 		470.9
(0.6)
P 		505.2
(1.3)
P 		271
B 648.7
(0.8)
P 		513.4
(-1.3)
P 		408.6
(-2.9)
P 		401.6
(-3)
P 		676.7
(1.3)
P 		788.4
(3)
P 		387
C 629.1
(1.7)
P 		502.9
(-0.4)
P 		411
(-1.9)
P 		346.2
(-3)
P 		481.2
(-0.8)
P 		708.6
(3)
P 		362
avr 529
(0) 		532.2
(0.1) 		386.8
(-3) 		404.2
(-2.6) 		542.9
(0.3) 		667.4
(3) 		281
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181017_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7975
Sequence Type Exemplar sequence
Representative Public ID C16A3.4 NCBI
Target Description C16A3.4 /REP_DB=WormBase Gene ID /WP=CE04004 /TR=Q18037 /GB=AAB47598.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065996(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065996 NCBI Caenorhabditis elegans C16A3.4 (C16A3.4) mRNA, complete cds. 11/11 None
SNAP00000030743 ENSEMBL cdna:SNAP chromosome:CEL140:III:6381583:6382838:1 11/11 None
GENEFINDER00000030792 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6381583:6382838:1 11/11 None
C16A3.4 ENSEMBL cdna:known chromosome:CEL140:III:6381571:6382961:1 gene:C16A3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6381581-6382837(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16A3.4
Entrez Gene 175905 Entrez gene
SwissProt Q18037 EMBL-EBI
WormBase CE04004 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:19214_AT zinc finger (C2H2 type) family protein at
ATH1-121501:253526_AT zinc finger (C2H2 type) family protein at
CANINE:1583673_AT zinc finger protein 622 cfa
CANINE_2:CFA.12414.1.A1_AT zinc finger protein 622 cfa
CANINE_2:CFA.12414.1.A1_S_AT zinc finger protein 622 cfa
CANINE_2:CFAAFFX.29168.1.S1_S_AT zinc finger protein 622 cfa
DROSOPHILA_2:1632374_AT dm
DROSGENOME1:153695_AT dm
CHICKEN:GGA.3853.1.S1_AT zinc finger protein 622 gga
CHICKEN:GGA.3853.1.S2_AT zinc finger protein 622 gga
U133_X3P:HS.60300.0.A1_3P_AT zinc finger protein 622 hs
HG-U133_PLUS_2:225152_AT zinc finger protein 622 hs
HG-U133B:225152_AT zinc finger protein 622 hs
HG-U95C:64477_AT zinc finger protein 622 hs
U133_X3P:HS2.221488.1.S1_3P_S_AT Zinc finger protein 622 hs
U133_X3P:HS2.221488.1.S1_3P_AT Zinc finger protein 622 hs
U133_X3P:1560075_3P_AT Zinc finger protein 622 hs
HG-U133_PLUS_2:1560075_AT Zinc finger protein 622 hs
HG-U95D:89667_AT Zinc finger protein 622 hs
HG-U95C:63530_AT Zinc finger protein 622 hs
HU35KSUBA:AA085476_AT Zinc finger protein 622 hs
HU35KSUBD:RC_AA194818_AT Zinc finger protein 622 hs
MOE430A:1425030_AT zinc finger protein 622 mm
MOUSE430A_2:1425030_AT zinc finger protein 622 mm
MOUSE430_2:1425030_AT zinc finger protein 622 mm
MOUSE430_2:1453158_AT zinc finger protein 622 mm
MOE430B:1453158_AT zinc finger protein 622 mm
MU11KSUBA:AA274842_S_AT zinc finger protein 622 mm
MG-U74AV2:96794_AT zinc finger protein 622 mm
MG-U74AV2:161927_AT zinc finger protein 622 mm
MOE430A:1438000_X_AT zinc finger protein 622 mm
MOUSE430A_2:1438000_X_AT zinc finger protein 622 mm
MOUSE430_2:1438000_X_AT zinc finger protein 622 mm
MOE430B:1446477_AT zinc finger protein 622 mm
MOUSE430_2:1446477_AT zinc finger protein 622 mm
MOE430B:1447775_X_AT zinc finger protein 622 mm
MOUSE430_2:1447775_X_AT zinc finger protein 622 mm
MU19KSUBC:TC41201_AT Zinc finger protein 622 (Zfp622), mRNA mm
RG-U34A:RC_AA894086_G_AT zinc finger protein 622 (predicted) rn
RG-U34A:RC_AA894086_AT zinc finger protein 622 (predicted) rn
RG-U34B:RC_AI009062_AT zinc finger protein 622 (predicted) rn
RAE230A:1373647_AT zinc finger protein 622 (predicted) rn
RAT230_2:1373647_AT zinc finger protein 622 (predicted) rn
RAE230A:1373012_AT Zinc finger protein 622 (predicted) rn
RAT230_2:1373012_AT Zinc finger protein 622 (predicted) rn
YEAST_2:1771650_AT Protein of unknown function involved in bud growth in the mitotic signaling network; proposed negative regulator of Swe1p and Gin4p; contains dispersed C2H2 zinc finger domains Sc
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB47598 Hypothetical protein C16A3.4 [Caenorhabditis elegans] ref|NP_498397.1| C16A3.4 [Caenorhabditis elegans] 0.0
blast CAE72512 Hypothetical protein CBG19691 [Caenorhabditis briggsae] 0.0
blast AAH68406 Znf622l protein [Danio rerio] 1.0E-56
Sequence
Target Sequence 
>C. ELEGANS:181017_AT
gattccaacttccagacaggcaatacttgagcgatgaacttggatgcttaagctacttgg
gacttaaagttggagctggtcgttgctgtatcttctgcccagacgttaaagccagatacg
aatcagttcagagttgtcagcagcacatgcgagataagcagcactgcaaactccgcagag
atcctgaaagcatgattgagctcgacgactactatgattacagtccgatgtatgatggag
atgatcaagataagtcagaactgtttgatgatggatggtcgcttactctcccttctggag
ctaaaattggacaccgtaaccttcatcgatatttcaaacaataccttcgcccagttgatg
gtacacagagacttgtttcaagagcagcactcgataaagcaaagggattctatccagctc
tcgcttggactggaactacgactgtcgcggccaagaaggttgctcgagacatgaagttcg
ttgagcgtttccgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCCAACTTCCAGACAGGCAATA 291 433 569 Antisense
GTTGGAGCTGGTCGTTGCTGTATCT 161 437 637 Antisense
GCAGCACTGCAAACTCCGCAGAGAT 586 313 726 Antisense
GAGCTCGACGACTACTATGATTACA 567 387 766 Antisense
GATGATGGATGGTCGCTTACTCTCC 86 411 835 Antisense
CTTACTCTCCCTTCTGGAGCTAAAA 146 223 850 Antisense
ACAATACCTTCGCCCAGTTGATGGT 259 115 906 Antisense
CTATCCAGCTCTCGCTTGGACTGGA 557 223 978 Antisense
GACTGGAACTACGACTGTCGCGGCC 126 375 996 Antisense
GTCGCGGCCAAGAAGGTTGCTCGAG 62 475 1012 Antisense
ATGAAGTTCGTTGAGCGTTTCCGTC 313 43 1039 Antisense
Sequence Source Affymetrix Proprietary Database