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[181016_at]

Description C39B10.5 /REP_DB=WormBase Gene ID /WP=CE02160 /TR=Q18520 /GB=CAA90334.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 29      6grp_total > 32      4grp_total > 26      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 31.7
(-3)
P 		78.9
(-0.1)
P 		50.9
(-1.8)
A 		131
(3)
P 		99
B 48
(-2)
A 		76.5
(3)
P 		57.3
(-0.4)
P 		42.2
(-3)
P 		34
C 66.7
(0.5)
P 		66.5
(0.5)
P 		42.6
(-3)
P 		83.4
(3)
P 		41
avr 48.8
(-3) 		74
(1.1) 		50.3
(-2.8) 		85.5
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 36.4
(0)
A 		39.2
(0.4)
P 		56.1
(2.7)
P 		58.6
(3)
A 		37.1
(0.1)
A 		13.8
(-3)
A 		45
B 71
(2.8)
P 		70.1
(2.7)
P 		73.3
(3)
P 		21.5
(-1.4)
A 		45.5
(0.7)
A 		2
(-3)
A 		71
C 47.8
(1.4)
P 		48
(1.4)
P 		59.9
(3)
A 		42.7
(0.7)
A 		17.6
(-2.6)
A 		14.3
(-3)
A 		46
avr 51.7
(1.7) 		52.4
(1.8) 		63.1
(3) 		40.9
(0.5) 		33.4
(-0.4) 		10
(-3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.5
(-3)
P 		17.1
(1.4)
P 		13.3
(-1.6)
A 		19.2
(3)
P 		8
B 15.3
(0.8)
A 		18.9
(3)
P 		13.3
(-0.4)
P 		9
(-3)
P 		10
C 22.1
(3)
P 		19.1
(0.8)
P 		14.9
(-2.4)
P 		14.1
(-3)
P 		8
avr 16.3
(0.3) 		18.4
(3) 		13.8
(-3) 		14.1
(-2.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 6.7
(-1.3)
A 		14
(2.5)
P 		12.2
(1.6)
P 		14.9
(3)
A 		11.2
(1.1)
A 		3.4
(-3)
A 		12
B 24.7
(3)
P 		23.3
(2.7)
P 		17.8
(1.3)
P 		5.7
(-1.8)
A 		18.5
(1.5)
A 		0.7
(-3)
A 		24
C 17.7
(3)
P 		14.6
(1.6)
P 		15.2
(1.8)
A 		8.6
(-1.2)
A 		5.7
(-2.6)
A 		4.8
(-3)
A 		13
avr 16.4
(2.6) 		17.3
(3) 		15.1
(2.1) 		9.7
(-0.2) 		11.8
(0.7) 		3
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181016_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16331
Sequence Type Exemplar sequence
Representative Public ID C39B10.5 NCBI
Target Description C39B10.5 /REP_DB=WormBase Gene ID /WP=CE02160 /TR=Q18520 /GB=CAA90334.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077351(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077351 NCBI Caenorhabditis elegans C39B10.5 (C39B10.5) mRNA, complete cds. 11/11 None
SNAP00000006449 ENSEMBL cdna:SNAP chromosome:CEL140:X:10447279:10447650:1 11/11 None
GENEFINDER00000006455 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10447279:10447650:1 11/11 None
C39B10.5 ENSEMBL cdna:known chromosome:CEL140:X:10447279:10447650:1 gene:C39B10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10447278-10447650(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C39B10.5
Entrez Gene 183334 Entrez gene
SwissProt Q18520 EMBL-EBI
WormBase CE02160 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90334 Hypothetical protein C39B10.5 [Caenorhabditis elegans] ref|NP_509752.1| C39B10.5 [Caenorhabditis elegans] 2.0E-54
blast CAA90334 Hypothetical protein C39B10.5 [Caenorhabditis elegans] ref|NP_509752.1| C39B10.5 [Caenorhabditis elegans] 2.0E-43
Sequence
Target Sequence 
>C. ELEGANS:181016_AT
atggatatggaacgcgagtctaacgcaattgttgaagcaattatgaatcacttcgacgta
caagaaaaagtggttcgtgagctcaaaaaacgaattgcagttcatgaagagatatatgca
aacaaagataagtacattgacaatctctttgagttctatggaactgcaatggccgagatg
aacaatcaacttctacaaaaaaacgaggagaatcgtctcttgaaggagaaattgggtttc
atggataaggaaattgcaaaaatgtatgaacacgtgtttggaggagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGATATGGAACGCGAGTCTAACG 305 51 13 Antisense
GAGTCTAACGCAATTGTTGAAGCAA 589 399 28 Antisense
TTATGAATCACTTCGACGTACAAGA 602 679 53 Antisense
GAAAAAGTGGTTCGTGAGCTCAAAA 352 355 76 Antisense
AACGAATTGCAGTTCATGAAGAGAT 560 145 101 Antisense
GTACATTGACAATCTCTTTGAGTTC 344 459 144 Antisense
GTTCTATGGAACTGCAATGGCCGAG 95 441 165 Antisense
GGAACTGCAATGGCCGAGATGAACA 692 529 172 Antisense
GCCGAGATGAACAATCAACTTCTAC 279 285 184 Antisense
AACGAGGAGAATCGTCTCTTGAAGG 360 145 214 Antisense
GTATGAACACGTGTTTGGAGGAGCT 1 457 276 Antisense
Sequence Source Affymetrix Proprietary Database