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[181015_at]

Description C45G7.6 /REP_DB=WormBase Gene ID /WP=CE17552 /TR=O76356 /GB=AAC19184.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 49      6grp_cgc > 84      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 3.1
(-3)
A 		87.6
(2.1)
A 		102.4
(3)
A 		8.4
(-2.7)
A 		99
B 3.9
(-3)
A 		117.7
(3)
A 		113.9
(2.8)
A 		6.1
(-2.9)
A 		114
C 10.9
(-2.7)
A 		120.7
(3)
A 		113.8
(2.6)
A 		5.1
(-3)
A 		116
avr 6
(-3) 		108.7
(2.9) 		110
(3) 		6.5
(-3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 107.8
(0.4)
A 		112.2
(0.5)
A 		118.3
(0.7)
A 		187.4
(3)
P 		56.6
(-1.3)
A 		4.2
(-3)
A 		183
B 70.3
(-0.2)
A 		11.9
(-2.8)
A 		145.4
(3)
A 		137.5
(2.7)
A 		74.9
(-0)
A 		6.2
(-3)
A 		139
C 130.6
(1.1)
A 		37.3
(-2)
A 		188.7
(3)
P 		123.2
(0.8)
A 		125.6
(0.9)
A 		8.4
(-3)
A 		180
avr 102.9
(1) 		53.8
(-1) 		150.8
(3) 		149.4
(2.9) 		85.7
(0.3) 		6.3
(-3) 		145
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 1.1
(-3)
A 		19
(1.2)
A 		26.8
(3)
A 		1.2
(-3)
A 		26
B 1.2
(-3)
A 		29.1
(3)
A 		26.4
(2.4)
A 		1.3
(-3)
A 		28
C 3.6
(-2.6)
A 		34.7
(2.2)
A 		39.7
(3)
A 		0.9
(-3)
A 		39
avr 2
(-2.8) 		27.6
(2.3) 		31
(3) 		1.1
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 19.9
(-0.6)
A 		39.9
(2)
A 		25.8
(0.2)
A 		47.5
(3)
P 		17.1
(-0.9)
A 		1
(-3)
A 		47
B 24.5
(0.9)
A 		4
(-2.7)
A 		35.3
(2.8)
A 		36.4
(3)
A 		30.4
(1.9)
A 		2.3
(-3)
A 		34
C 48.4
(3)
A 		11.4
(-1.9)
A 		48
(2.9)
P 		24.8
(-0.1)
A 		40.7
(2)
A 		2.8
(-3)
A 		46
avr 30.9
(2) 		18.4
(-0.1) 		36.4
(3) 		36.2
(3) 		29.4
(1.8) 		2
(-3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181015_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10751
Sequence Type Exemplar sequence
Representative Public ID C45G7.6 NCBI
Target Description C45G7.6 /REP_DB=WormBase Gene ID /WP=CE17552 /TR=O76356 /GB=AAC19184.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067803(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067803 NCBI Caenorhabditis elegans CaDHerin family member (cdh-10) (cdh-10) mRNA, complete cds. 11/11 None
SNAP00000040033 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2453619:2463363:-1 11/11 None
GENEFINDER00000040040 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2454309:2463363:-1 11/11 None
C45G7.5 ENSEMBL cdna:known chromosome:CEL140:IV:2436513:2463367:-1 gene:C45G7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2454314-2463369(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cdh-10
Ensembl C45G7.5
Entrez Gene 183476 Entrez gene
SwissProt Q5F4U0 EMBL-EBI
WormBase CE38044 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7018 microtubule-based movement inferred from electronic annotation QuickGO AmiGO
7156 homophilic cell adhesion inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5874 microtubule inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_500204 CaDHerin family member (cdh-10) [Caenorhabditis elegans] gb|AAW88406.1| Cadherin family protein 10 [Caenorhabditis elegans] 0.0
blast T33136 hypothetical protein C45G7.6 - Caenorhabditis elegans 0.0
blast T33135 hypothetical protein C45G7.5 - Caenorhabditis elegans 0.0
blast CAE74698 Hypothetical protein CBG22513 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002126 EMBL-EBI Cadherin 1.8E-5
Pfam IPR002126 EMBL-EBI Cadherin 4.1E-10
Pfam IPR002126 EMBL-EBI Cadherin 1.6E-9
Pfam IPR002126 EMBL-EBI Cadherin 1.8E-5
Pfam IPR002126 EMBL-EBI Cadherin 9.9E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500204.2 1 2225-2247
C45G7.5 1 2225-2247
Sequence
Target Sequence 
>C. ELEGANS:181015_AT
gattcagatgcaccgggagcagcttccacagtcaactaccaaatttccaacccatctgac
gtcaccgatgacgtcattagtgtgaattccacgtcaggagttgtccaaatctcaggatcc
ctttggggaatgccacgtgagcagccatacaaattccaagtgattgctcaagattttgga
gcgcctgggctcaattccacgtcgattttgagcttaagagttagaaataaggacgaggtg
gtcactgaggaggcggtggagtttgaagaaattacacaggaagttgtgattcaggagaac
cttgccccggacaccaaaatctacaccgcaaaagcggttttacgtggaattccctcaaaa
acacgtggcaaagtcgtctacactttgaaagacctattgagctcagaaaaagagccaatt
ttcgcagtcgacaaggattccggcgacatttttgtggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCAGATGCACCGGGAGCAGCTT 251 431 3457 Antisense
AGCTTCCACAGTCAACTACCAAATT 254 79 3477 Antisense
AACCCATCTGACGTCACCGATGACG 656 145 3505 Antisense
GAATTCCACGTCAGGAGTTGTCCAA 238 323 3540 Antisense
GTTGTCCAAATCTCAGGATCCCTTT 709 429 3556 Antisense
GAATGCCACGTGAGCAGCCATACAA 1 331 3584 Antisense
TTTGGAGCGCCTGGGCTCAATTCCA 507 665 3631 Antisense
TGTGATTCAGGAGAACCTTGCCCCG 330 555 3741 Antisense
AACACGTGGCAAAGTCGTCTACACT 440 113 3816 Antisense
TTTCGCAGTCGACAAGGATTCCGGC 251 669 3876 Antisense
GGATTCCGGCGACATTTTTGTGGTG 7 509 3891 Antisense
Sequence Source Affymetrix Proprietary Database