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[181014_at]

Description C39H7.4 /REP_DB=WormBase Gene ID /WP=CE06943 /TR=Q18550 /GB=AAB00671.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 71      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_highest_nonorm > 54      6grp_total > 71      4grp_total > 05      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 582
1 2 3 4 range
A 1086.5
(-1.4)
P 		1004.9
(-2.4)
P 		953
(-3)
P 		1452.5
(3)
P 		500
B 1216.2
(0.5)
P 		971.8
(-3)
P 		993.3
(-2.7)
P 		1392.9
(3)
P 		421
C 1159.5
(-0.4)
P 		910.8
(-3)
P 		919.5
(-2.9)
P 		1492.9
(3)
P 		582
avr 1154.1
(-0.6) 		962.5
(-2.9) 		955.3
(-3) 		1446.1
(3) 		491

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 990
1 2 3 4 5 6 range
A 979.3
(-0.5)
P 		1158.3
(1.3)
P 		1339.3
(3)
P 		1280.3
(2.4)
P 		1233.3
(2)
P 		717.7
(-3)
P 		622
B 1040.8
(-1)
P 		1330.1
(1.3)
P 		1538.7
(3)
P 		1469.4
(2.4)
P 		1200.5
(0.3)
P 		794.2
(-3)
P 		745
C 816.9
(-3)
P 		1217.9
(-0.3)
P 		1051.1
(-1.4)
P 		1707.7
(3)
P 		1051.7
(-1.4)
P 		841.1
(-2.8)
P 		891
avr 945.7
(-1.6) 		1235.4
(0.9) 		1309.7
(1.5) 		1485.8
(3) 		1161.8
(0.2) 		784.3
(-3) 		702
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 395.6
(3)
P 		218.1
(-2.8)
P 		249.1
(-1.8)
P 		212.6
(-3)
P 		183
B 387.8
(3)
P 		240
(-2.6)
P 		230.2
(-3)
P 		296.8
(-0.5)
P 		158
C 383.8
(3)
P 		261.9
(-2.5)
P 		320.5
(0.1)
P 		251.7
(-3)
P 		132
avr 389.1
(3) 		240
(-3) 		266.6
(-1.9) 		253.7
(-2.4) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 313
1 2 3 4 5 6 range
A 180.5
(-2.9)
P 		411.9
(3)
P 		291.7
(-0)
P 		324.7
(0.8)
P 		372.2
(2)
P 		174.7
(-3)
P 		237
B 362.2
(-0.9)
P 		442.7
(1.6)
P 		373.6
(-0.6)
P 		389.2
(-0.1)
P 		487.8
(3)
P 		296.1
(-3)
P 		192
C 302.8
(-1)
P 		371.6
(3)
P 		267.5
(-3)
P 		343.4
(1.4)
P 		340.3
(1.2)
P 		281.5
(-2.2)
P 		104
avr 281.8
(-1.8) 		408.7
(3) 		310.9
(-0.7) 		352.4
(0.9) 		400.1
(2.7) 		250.8
(-3) 		158
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181014_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10784
Sequence Type Exemplar sequence
Representative Public ID C39H7.4 NCBI
Target Description C39H7.4 /REP_DB=WormBase Gene ID /WP=CE06943 /TR=Q18550 /GB=AAB00671.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068433(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068433 NCBI Caenorhabditis elegans C39H7.4 (C39H7.4) mRNA, complete cds. 11/11 None
SNAP00000020747 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5612135:5614586:-1 11/11 None
GENEFINDER00000020755 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5612135:5614586:-1 11/11 None
C39H7.4 ENSEMBL cdna:known chromosome:CEL140:IV:5612016:5614593:-1 gene:C39H7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5612140-5614592(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C39H7.4
Entrez Gene 183349 Entrez gene
SwissProt Q18550 EMBL-EBI
WormBase CE06943 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00671 Hypothetical protein C39H7.4 [Caenorhabditis elegans] ref|NP_500834.1| C39H7.4 [Caenorhabditis elegans] 0.0
blast CAE72689 Hypothetical protein CBG19910 [Caenorhabditis briggsae] 1.0E-160
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500834.1 4 208-227,242-264,277-299,343-365
C39H7.4 4 208-227,242-264,277-299,343-365
SNAP00000020747 4 208-227,242-264,277-299,343-365
GENEFINDER00000020755 4 208-227,242-264,277-299,343-365
Sequence
Target Sequence 
>C. ELEGANS:181014_AT
gatgtggatcgtcttgcactttacaacaattcatctctcggatatcaacgactttgcttc
cttctttcaagatatccagcaattgcgatgactataattgccacgtggatgttgtgggga
cgtggattgggattgtcgtctgtgaaatcaaatgaaaatgtttgttatattgtgtcattt
gttgctggagcattcattctttcgagtcaagtcgtgctgacaactgcacacgggaattct
tacaagaaagagaaaattctagcaaatctatatcacttttccaacaccgttgccattctg
atttctatcacagtcattgtttttgcagcgatttcgtttcaggatgtcaataaagtcaac
cataaaactgacacctgtacatggatgagtgctccattaaatctgggaggaatcccagaa
ttttactgtttcactccacaagagagacaaacattcttgtcgattttgattggagcatct
gggcttgtcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTGGATCGTCTTGCACTTTACA 359 407 577 Antisense
GCACTTTACAACAATTCATCTCTCG 156 317 592 Antisense
GGATATCAACGACTTTGCTTCCTTC 437 509 616 Antisense
GCTTCCTTCTTTCAAGATATCCAGC 221 307 632 Antisense
GCGATGACTATAATTGCCACGTGGA 179 291 661 Antisense
GTGGATTGGGATTGTCGTCTGTGAA 271 489 698 Antisense
GAGCATTCATTCTTTCGAGTCAAGT 278 389 764 Antisense
GCTGACAACTGCACACGGGAATTCT 206 297 792 Antisense
TTTCCAACACCGTTGCCATTCTGAT 99 669 854 Antisense
GCAGCGATTTCGTTTCAGGATGTCA 167 315 901 Antisense
GATTGGAGCATCTGGGCTTGTCATT 180 435 1044 Antisense
Sequence Source Affymetrix Proprietary Database