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[181013_at]

Description M02B7.4 /REP_DB=WormBase Gene ID /WP=CE12326 /TR=Q94284 /GB=AAB09129.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 10      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 26.8
(-2)
A 		22.1
(-2.3)
A 		8
(-3)
A 		122.8
(3)
A 		115
B 5.8
(-2.9)
A 		5.2
(-3)
A 		5.1
(-3)
A 		72.1
(3)
P 		67
C 18.6
(-3)
A 		50.7
(-0)
A 		18.9
(-3)
A 		82.9
(3)
P 		64
avr 17.1
(-2.5) 		26
(-1.9) 		10.7
(-3) 		92.6
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 5.3
(-2.8)
A 		4
(-3)
A 		38.9
(2.3)
A 		27.3
(0.5)
A 		43.6
(3)
A 		19.4
(-0.7)
A 		40
B 13.8
(-2.4)
A 		10.7
(-2.9)
A 		26.3
(-0.1)
A 		10.3
(-3)
A 		39.8
(2.4)
A 		43.2
(3)
P 		33
C 11.2
(-1.8)
A 		4
(-2.9)
A 		3.3
(-3)
A 		34.6
(1.8)
A 		30.8
(1.2)
A 		42.2
(3)
A 		39
avr 10.1
(-2.3) 		6.2
(-3) 		22.8
(0.1) 		24.1
(0.4) 		38.1
(3) 		34.9
(2.4) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 9.7
(-0.1)
A 		4.8
(-2)
A 		2.1
(-3)
A 		18
(3)
A 		16
B 1.9
(-2.7)
A 		1.3
(-3)
A 		1.2
(-3)
A 		15.4
(3)
P 		14
C 6.2
(-3)
A 		14.6
(3)
A 		6.6
(-2.7)
A 		14
(2.6)
P 		8
avr 5.9
(-1.8) 		6.9
(-1.3) 		3.3
(-3) 		15.8
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1
(-3)
A 		1.4
(-2.8)
A 		8.5
(0.7)
A 		6.9
(-0.1)
A 		13.1
(3)
A 		4.7
(-1.2)
A 		12
B 4.8
(-2.1)
A 		3.6
(-2.6)
A 		6.4
(-1.4)
A 		2.7
(-3)
A 		16.2
(3)
A 		16.1
(3)
P 		14
C 4.1
(-1.5)
A 		1.2
(-2.8)
A 		0.8
(-3)
A 		7
(-0.2)
A 		10
(1.2)
A 		14.1
(3)
A 		13
avr 3.3
(-2.3) 		2.1
(-3) 		5.2
(-1.3) 		5.5
(-1.1) 		13.1
(3) 		11.6
(2.2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181013_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11217
Sequence Type Exemplar sequence
Representative Public ID M02B7.4 NCBI
Target Description M02B7.4 /REP_DB=WormBase Gene ID /WP=CE12326 /TR=Q94284 /GB=AAB09129.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068016(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068016 NCBI Caenorhabditis elegans M02B7.4 (M02B7.4) mRNA, complete cds. 11/11 None
SNAP00000028168 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3796381:3803367:-1 9/11 None
GENEFINDER00000028178 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3801682:3803301:-1 11/11 None
M02B7.4 ENSEMBL cdna:known chromosome:CEL140:IV:3801597:3803367:-1 gene:M02B7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3801602-3803373(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M02B7.4
Entrez Gene 187398 Entrez gene
SwissProt Q94284 EMBL-EBI
WormBase CE12326 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15873_AT expressed protein at
ATH1-121501:254658_AT expressed protein at
CANINE_2:CFAAFFX.30769.1.S1_AT similar to CG6308-PA cfa
DROSOPHILA_2:1640298_AT dm
DROSGENOME1:145123_AT dm
U133_X3P:HS2.124005.1.S1_3P_AT asparagine-linked glycosylation 14 homolog (yeast) hs
HG-U133_PLUS_2:1553954_AT asparagine-linked glycosylation 14 homolog (yeast) hs
HG-U95E:84301_AT asparagine-linked glycosylation 14 homolog (yeast) hs
HG-U95E:84303_G_AT asparagine-linked glycosylation 14 homolog (yeast) hs
U133_X3P:HS2.434344.1.S1_3P_AT Asparagine-linked glycosylation 14 homolog (yeast) hs
HG-U133_PLUS_2:1560533_AT Asparagine-linked glycosylation 14 homolog (yeast) hs
MOE430A:1419114_AT asparagine-linked glycosylation 14 homolog (yeast) mm
MOUSE430A_2:1419114_AT asparagine-linked glycosylation 14 homolog (yeast) mm
MOUSE430_2:1419114_AT asparagine-linked glycosylation 14 homolog (yeast) mm
MOE430A:1419116_AT asparagine-linked glycosylation 14 homolog (yeast) mm
MOUSE430A_2:1419116_AT asparagine-linked glycosylation 14 homolog (yeast) mm
MOUSE430_2:1419116_AT asparagine-linked glycosylation 14 homolog (yeast) mm
MOUSE430A_2:1419115_AT asparagine-linked glycosylation 14 homolog (yeast) mm
MOE430A:1419115_AT asparagine-linked glycosylation 14 homolog (yeast) mm
MOUSE430_2:1419115_AT asparagine-linked glycosylation 14 homolog (yeast) mm
MG-U74BV2:114980_AT asparagine-linked glycosylation 14 homolog (yeast) mm
MG-U74BV2:104787_AT asparagine-linked glycosylation 14 homolog (yeast) mm
MU19KSUBC:TC38344_AT Asparagine-linked glycosylation 14 homolog (yeast) (Alg14), mRNA mm
MU19KSUBC:TC38344_G_AT Asparagine-linked glycosylation 14 homolog (yeast) (Alg14), mRNA mm
RG-U34C:RC_AI232639_AT similar to RIKEN cDNA 5430428G01 rn
RAE230A:1372152_AT similar to RIKEN cDNA 5430428G01 rn
RAT230_2:1372152_AT similar to RIKEN cDNA 5430428G01 rn
Protein Similarities
Method ID Description E-Value
blast AAM97997 Osmotic avoidance abnormal protein 3, isoform b [Caenorhabditis elegans] ref|NP_001023308.1| OSMotic avoidance abnormal family member (osm-3) [Caenorhabditis elegans] sp|P46873|OSM3_CAEEL Osmotic avoidance abnormal protein 3 (Kinesin-like protein osm-3) 0.0
blast AAF99084 Osm-3 [Caenorhabditis elegans] 0.0
blast AAM97996 Osmotic avoidance abnormal protein 3, isoform a [Caenorhabditis elegans] ref|NP_741362.1| OSMotic avoidance abnormal family member (osm-3) [Caenorhabditis elegans] 0.0
blast AAB09129 Hypothetical protein M02B7.4 [Caenorhabditis elegans] ref|NP_500417.1| M02B7.4 [Caenorhabditis elegans] 1.0E-166
blast AAB09129 Hypothetical protein M02B7.4 [Caenorhabditis elegans] ref|NP_500417.1| M02B7.4 [Caenorhabditis elegans] 1.0E-132
blast CAE65674 Hypothetical protein CBG10740 [Caenorhabditis briggsae] 6.0E-52
blast CAE65674 Hypothetical protein CBG10740 [Caenorhabditis briggsae] 7.0E-52
blast AAH83226 Zgc:101623 [Danio rerio] ref|NP_001006092.1| hypothetical protein LOC450072 [Danio rerio] 4.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.0E-126
Pfam IPR001752 EMBL-EBI Kinesin, motor region 6.9E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500417.1 3 5-27,153-175,207-229
M02B7.4 3 5-27,153-175,207-229
SNAP00000028168 2 5-27,139-161
GENEFINDER00000028178 3 131-153,185-207,227-249
Sequence
Target Sequence 
>C. ELEGANS:181013_AT
cgagatctcgggaagtcggacaatcctacttgacgtcgattggctcaactatcaacgcaa
ccgcgttcgccgtgaagcttatctacagaattcgtccggatctaatcgtgctcaacgggc
ctggaacctgtatcccagtcgccttggcggccgccttcttcgacataattcgcctaatcg
atacagttattatctacgaagaatcgatttgccgagtgaaaaagctctccttatccggat
ttggagcacaaattcacgttggatggctcggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGATCTCGGGAAGTCGGACAATC 111 247 368 Antisense
GTCGGACAATCCTACTTGACGTCGA 650 471 382 Antisense
GACGTCGATTGGCTCAACTATCAAC 515 373 399 Antisense
CAACTATCAACGCAACCGCGTTCGC 362 187 413 Antisense
GTTCGCCGTGAAGCTTATCTACAGA 88 443 432 Antisense
TATCTACAGAATTCGTCCGGATCTA 170 657 447 Antisense
CGGATCTAATCGTGCTCAACGGGCC 596 243 464 Antisense
TCAACGGGCCTGGAACCTGTATCCC 489 631 479 Antisense
CGCCTTCTTCGACATAATTCGCCTA 196 255 519 Antisense
GTGAAAAAGCTCTCCTTATCCGGAT 221 481 583 Antisense
AAATTCACGTTGGATGGCTCGGAGA 420 115 617 Antisense
Sequence Source Affymetrix Proprietary Database