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[181012_s_at]

Description F49F1.3 /REP_DB=WormBase Gene ID /WP=CE25894 /TR=Q9GZE7 /GB=AAF99970.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.8
(-3)
A 		6.7
(3)
A 		3.7
(-1.6)
A 		3
(-2.7)
A 		4
B 4
(3)
A 		3.9
(2.6)
A 		2.5
(-2.3)
A 		2.3
(-3)
A 		2
C 2.3
(-3)
A 		2.3
(-3)
A 		3.3
(-1.9)
A 		7.9
(3)
A 		6
avr 3
(-3) 		4.3
(2.6) 		3.2
(-2.1) 		4.4
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 3.1
(-1.5)
A 		2.4
(-2.2)
A 		7.6
(3)
A 		2
(-2.6)
A 		4.8
(0.2)
A 		1.6
(-3)
A 		6
B 3.9
(-0.6)
A 		1.6
(-2.9)
A 		7.4
(3)
A 		3.1
(-1.4)
A 		1.5
(-3)
A 		1.5
(-3)
A 		6
C 1.6
(-3)
A 		5.5
(0.6)
A 		2.3
(-2.4)
A 		7.4
(2.4)
A 		8.1
(3)
A 		2.5
(-2.2)
A 		7
avr 2.9
(-1.5) 		3.2
(-1) 		5.8
(3) 		4.2
(0.5) 		4.8
(1.5) 		1.9
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1
(0.6)
A 		1.4
(3)
A 		1
(0.6)
A 		0.4
(-3)
A 		1
B 1.3
(3)
A 		1
(0.8)
A 		0.6
(-2.3)
A 		0.5
(-3)
A 		1
C 0.8
(-2)
A 		0.7
(-3)
A 		1.1
(1)
A 		1.3
(3)
A 		1
avr 1
(3) 		1
(3) 		0.9
(1) 		0.7
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.6
(-2)
A 		0.8
(-1)
A 		1.6
(3)
A 		0.5
(-2.5)
A 		1.4
(2)
A 		0.4
(-3)
A 		1
B 1.4
(1.2)
A 		0.5
(-3)
A 		1.8
(3)
A 		0.8
(-1.6)
A 		0.6
(-2.5)
A 		0.6
(-2.5)
A 		1
C 0.6
(-3)
A 		1.7
(0.3)
A 		0.6
(-3)
A 		1.5
(-0.3)
A 		2.6
(3)
A 		0.8
(-2.4)
A 		2
avr 0.9
(-1) 		1
(-0.3) 		1.3
(1.7) 		0.9
(-1) 		1.5
(3) 		0.6
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181012_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10564
Sequence Type Exemplar sequence
Representative Public ID F49F1.3 NCBI
Target Description F49F1.3 /REP_DB=WormBase Gene ID /WP=CE25894 /TR=Q9GZE7 /GB=AAF99970.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068082(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068082 NCBI Caenorhabditis elegans F49F1.3 (F49F1.3) mRNA, complete cds. 11/11 None
F49F1.3 ENSEMBL cdna:known chromosome:CEL140:IV:4114633:4116094:1 gene:F49F1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034581 2/11 Cross Hyb Matching Probes None
GENEFINDER00000034598 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl F49F1.3
Entrez Gene 177173 Entrez gene
SwissProt Q9GZE7 EMBL-EBI
WormBase CE25894 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99970 Hypothetical protein F49F1.3 [Caenorhabditis elegans] ref|NP_500483.1| F49F1.3 [Caenorhabditis elegans] 2.0E-45
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500483.1 3 41-60,64-86,160-182
F49F1.3 3 41-60,64-86,160-182
Sequence
Target Sequence 
>C. ELEGANS:181012_S_AT
tactatggattgggtctcagctggaatggggtactattcccttgagtcgtaaagcaacac
tgtacccgttatcatactcaacaaagaacttcctaactctccttcttgtctttgttgctc
tcttggctgtaactgtggttgaggccggagatccagatcttggtggaatcttcagtggaa
tcggaggtatgctcggatcgatcggtggattggctggagccggtggtggaaagaagaaac
atgaagcaagaattgaagaaggaagaatttacttcttctttccgccaccggctccagcca
ttccactgatcgacgaaaaaagtcccccgattccactgaagattccaccaagatctggac
ctccggcctccacaacggccacggcgaatagcgcgacaaaaacaagaatgagaaggaaga
agttcatttttgatgattatagtcgacttggagtgctgttttatacaatagaattggtct
cagctggaatggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTATGGATTGGGTCTCAGCTGGA 313 645 44 Antisense
GGGTCTCAGCTGGAATGGGGTACTA 524 495 55 Antisense
GGTACTATTCCCTTGAGTCGTAAAG 3 495 73 Antisense
CACTGTACCCGTTATCATACTCAAC 116 199 101 Antisense
CAACAAAGAACTTCCTAACTCTCCT 128 189 122 Antisense
CAGCCATTCCACTGATCGACGAAAA 377 203 338 Antisense
CCGATTCCACTGAAGATTCCACCAA 468 263 370 Antisense
AGATTCCACCAAGATCTGGACCTCC 567 15 383 Antisense
ACAACGGCCACGGCGAATAGCGCGA 637 111 415 Antisense
GTCGACTTGGAGTGCTGTTTTATAC 114 475 485 Antisense
TAGAATTGGTCTCAGCTGGAATGGG 659 651 512 Antisense
Sequence Source Affymetrix Proprietary Database