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[181011_at]

Description C35E7.9 /REP_DB=WormBase Gene ID /WP=CE17522 /TR=O61765 /GB=AAC17524.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 25.7
(-1.9)
A 		11.3
(-2.6)
A 		3.1
(-3)
A 		132.2
(3)
A 		129
B 8
(-1.9)
A 		3.3
(-3)
A 		3.1
(-3)
A 		29.8
(3)
A 		27
C 4.2
(-3)
A 		4.9
(-2.9)
A 		17
(-1.9)
A 		75.6
(3)
A 		71
avr 12.6
(-2.5) 		6.5
(-3) 		7.7
(-2.9) 		79.2
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 28.3
(-1.9)
A 		2.3
(-3)
A 		22.1
(-2.1)
A 		8.4
(-2.7)
A 		82.8
(0.5)
A 		140.7
(3)
P 		138
B 14.8
(-2.5)
A 		12.6
(-2.6)
A 		3.2
(-3)
A 		23.7
(-2.1)
A 		59.2
(-0.7)
A 		146.6
(3)
P 		143
C 13.3
(-3)
A 		43.5
(-1.4)
A 		12.7
(-3)
A 		34.1
(-1.9)
A 		56.9
(-0.7)
P 		127.8
(3)
P 		115
avr 18.8
(-2.7) 		19.5
(-2.7) 		12.7
(-3) 		22.1
(-2.6) 		66.3
(-0.4) 		138.4
(3) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 9.4
(-0.2)
A 		2.4
(-2.5)
A 		0.8
(-3)
A 		19.4
(3)
A 		19
B 2.6
(-1)
A 		0.8
(-2.9)
A 		0.7
(-3)
A 		6.4
(3)
A 		6
C 1.4
(-3)
A 		1.4
(-3)
A 		5.9
(-0.6)
A 		12.7
(3)
A 		11
avr 4.5
(-1.4) 		1.5
(-3) 		2.5
(-2.5) 		12.8
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 5.2
(-2.2)
A 		0.8
(-3)
A 		4.8
(-2.3)
A 		2.1
(-2.8)
A 		25
(1.3)
A 		34.2
(3)
P 		33
B 5.2
(-2.5)
A 		4.2
(-2.6)
A 		0.8
(-3)
A 		6.3
(-2.4)
A 		24.1
(-0.4)
A 		54.7
(3)
P 		54
C 4.9
(-2.7)
A 		13.3
(-1.5)
A 		3.2
(-3)
A 		6.9
(-2.4)
A 		18.4
(-0.7)
P 		42.8
(3)
P 		40
avr 5.1
(-2.7) 		6.1
(-2.5) 		2.9
(-3) 		5.1
(-2.7) 		22.5
(-0.1) 		43.9
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181011_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1124
Sequence Type Exemplar sequence
Representative Public ID C35E7.9 NCBI
Target Description C35E7.9 /REP_DB=WormBase Gene ID /WP=CE17522 /TR=O61765 /GB=AAC17524.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060423(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060423 NCBI Caenorhabditis elegans C35E7.9 (C35E7.9) mRNA, complete cds. 11/11 None
SNAP00000013367 ENSEMBL cdna:SNAP chromosome:CEL140:I:10815185:10816345:1 11/11 None
GENEFINDER00000013383 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10815185:10816345:1 11/11 None
C35E7.9 ENSEMBL cdna:known chromosome:CEL140:I:10815043:10816345:1 gene:C35E7.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10815115-10816276(+) 57.51 100.0
Public Domain and Genome References
Gene Title
Ensembl C35E7.9
Entrez Gene 172987 Entrez gene
SwissProt O61765 EMBL-EBI
WormBase CE17522 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17524 Hypothetical protein C35E7.9 [Caenorhabditis elegans] ref|NP_492824.1| C35E7.9 [Caenorhabditis elegans] 2.0E-57
blast AAC26930 Hypothetical protein F36H12.3 [Caenorhabditis elegans] ref|NP_500767.1| F36H12.3 [Caenorhabditis elegans] 3.0E-52
blast CAE61818 Hypothetical protein CBG05788 [Caenorhabditis briggsae] 4.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 4.2E-31
Sequence
Target Sequence 
>C. ELEGANS:181011_AT
gaagagtggtagtaaggatgctgagaagaaagaagagaagaaggaagaggagaagaagga
ggaaaagaaggaggaaaagaaagaggaaaagaaggaagatgaaaagaaggaggacgagaa
gaaggaggagccgaaaccccacatcactatcgatccacccggtgatctgatgttcaaggc
cgatcagcaagagcagaagaagctgaaactcacgaatactcacgacaagaaaattatgtt
caagatcaagacttcggataatcaggtttatcttatgaatccggtgtacggaactgtcga
accgggaaaatctgctaatcttacactcactcgaaacaaggcaccagcaaaagaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGTGGTAGTAAGGATGCTGAG 175 337 447 Antisense
CACTATCGATCCACCCGGTGATCTG 91 197 591 Antisense
GAAGCTGAAACTCACGAATACTCAC 254 343 645 Antisense
AACTCACGAATACTCACGACAAGAA 275 141 653 Antisense
GATCAAGACTTCGGATAATCAGGTT 60 423 690 Antisense
GGTTTATCTTATGAATCCGGTGTAC 587 505 711 Antisense
TCCGGTGTACGGAACTGTCGAACCG 377 587 726 Antisense
GTCGAACCGGGAAAATCTGCTAATC 67 473 742 Antisense
AAATCTGCTAATCTTACACTCACTC 651 117 754 Antisense
TGCTAATCTTACACTCACTCGAAAC 439 579 759 Antisense
CGAAACAAGGCACCAGCAAAAGAAG 200 251 778 Antisense
Sequence Source Affymetrix Proprietary Database