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[181009_at]

Description F13B6.2 /REP_DB=WormBase Gene ID /WP=CE16974 /TR=O44482 /GB=AAB92044.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 90      6grp_total > 42      4grp_total > 52      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 278.2
(3)
P 		199.7
(0.6)
P 		152.5
(-0.9)
P 		85.9
(-3)
P 		192
B 271.6
(2.1)
P 		312.3
(3)
P 		193.8
(0.3)
P 		53.7
(-3)
P 		259
C 280
(3)
P 		277.7
(2.9)
P 		181.4
(-0.4)
P 		103.9
(-3)
P 		176
avr 276.6
(3) 		263.2
(2.6) 		175.9
(-0.1) 		81.2
(-3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 138.5
(-1.4)
P 		187.1
(-0.1)
P 		306.1
(3)
P 		181.1
(-0.3)
P 		163.2
(-0.8)
P 		79.4
(-3)
P 		227
B 139.2
(-0.7)
P 		164.3
(0.3)
P 		227.1
(3)
P 		160.2
(0.2)
P 		123.8
(-1.4)
P 		86.2
(-3)
P 		141
C 175
(0.3)
P 		205.3
(1.6)
P 		238
(3)
P 		173
(0.2)
P 		123.1
(-2)
P 		99.5
(-3)
P 		139
avr 150.9
(-0.8) 		185.6
(0.5) 		257.1
(3) 		171.4
(-0) 		136.7
(-1.3) 		88.4
(-3) 		169
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 101.3
(3)
P 		43.4
(-0.9)
P 		39.9
(-1.2)
P 		12.6
(-3)
P 		89
B 86.6
(3)
P 		77.1
(2.2)
P 		44.9
(-0.3)
P 		11.4
(-3)
P 		75
C 92.7
(3)
P 		79.8
(2)
P 		63.2
(0.6)
P 		17.5
(-3)
P 		75
avr 93.5
(3) 		66.8
(1) 		49.3
(-0.3) 		13.8
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 25.5
(-2.2)
P 		66.5
(3)
P 		66.7
(3)
P 		45.9
(0.4)
P 		49.2
(0.8)
P 		19.3
(-3)
P 		47
B 48.4
(1.2)
P 		54.7
(2.9)
P 		55.2
(3)
P 		42.4
(-0.3)
P 		50.3
(1.7)
P 		32.2
(-3)
P 		23
C 64.9
(3)
P 		62.6
(2.6)
P 		60.6
(2.2)
P 		34.8
(-2.7)
P 		39.8
(-1.8)
P 		33.3
(-3)
P 		32
avr 46.3
(0.3) 		61.3
(3) 		60.8
(2.9) 		41
(-0.7) 		46.4
(0.3) 		28.3
(-3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181009_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10172
Sequence Type Exemplar sequence
Representative Public ID F13B6.2 NCBI
Target Description F13B6.2 /REP_DB=WormBase Gene ID /WP=CE16974 /TR=O44482 /GB=AAB92044.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068791(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068791 NCBI Caenorhabditis elegans F13B6.2 (F13B6.2) mRNA, complete cds. 11/11 None
F13B6.2 ENSEMBL cdna:known chromosome:CEL140:IV:7458784:7460802:-1 gene:F13B6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002763 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7458789-7460808(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13B6.2
Entrez Gene 184408 Entrez gene
SwissProt O44482 EMBL-EBI
WormBase CE16974 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92044 Hypothetical protein F13B6.2 [Caenorhabditis elegans] ref|NP_501192.1| F13B6.2 [Caenorhabditis elegans] 0.0
blast CAE61884 Hypothetical protein CBG05875 [Caenorhabditis briggsae] 1.0E-80
blast AAB92043 Hypothetical protein F13B6.1 [Caenorhabditis elegans] ref|NP_501191.1| F13B6.1 [Caenorhabditis elegans] 1.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501192.1 2 48-67,467-489
F13B6.2 2 48-67,467-489
Sequence
Target Sequence 
>C. ELEGANS:181009_AT
aattgatacttttacgatggacccaatttcaaccggagtcagctacactgttgggtttgg
acaagcaactacaacccttcaatctgctgggcttgttatgacttcaggatttccatattc
aatgaaacagactgacgtaacctataacgttaatcgtgttggaaatcaagatgtatcgtt
aacaatgaatcctctcttcaataggtatgaatcatacgacacaaatattattgtgaagtt
tgcatctggaacagagcaaggaagctcgtttccatctggtttgaatggaaaaatggtagc
atcaagtagtataaatagtgtagaaattagttcaatcggttcatttgctatccagtatca
tttaaatacaacaaccacaaatttggaggctacaacaaatcaaccattaataactactac
gaaatctacaaatgtcattcattctgctcatgaaaaaacgagaatgtacggccaaatgaa
ttacagtgcaccctttttacttgttctttttctgatgtttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGATACTTTTACGATGGACCCA 333 177 930 Antisense
GATGGACCCAATTTCAACCGGAGTC 386 405 945 Antisense
ACCGGAGTCAGCTACACTGTTGGGT 29 89 961 Antisense
TGGACAAGCAACTACAACCCTTCAA 658 547 987 Antisense
AACCCTTCAATCTGCTGGGCTTGTT 24 141 1002 Antisense
GTATCGTTAACAATGAATCCTCTCT 301 455 1102 Antisense
AAGGAAGCTCGTTTCCATCTGGTTT 259 161 1187 Antisense
ATCGGTTCATTTGCTATCCAGTATC 511 35 1264 Antisense
ACAAATGTCATTCATTCTGCTCATG 478 111 1357 Antisense
ATTACAGTGCACCCTTTTTACTTGT 447 11 1409 Antisense
TACTTGTTCTTTTTCTGATGTTTAC 161 645 1427 Antisense
Sequence Source Affymetrix Proprietary Database