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[181008_at]

Description C15C6.2B /REP_DB=WormBase Gene ID /WP=CE18503 /TR=Q9XVT3 /GB=CAB02728.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 5.9
(-2.6)
A 		34.9
(3)
A 		4.1
(-3)
A 		14.8
(-0.9)
A 		31
B 32.9
(0.1)
A 		9.3
(-2.4)
A 		3.8
(-3)
A 		60.7
(3)
A 		57
C 17
(-2.2)
A 		12.4
(-2.7)
A 		10.1
(-3)
A 		62.8
(3)
A 		53
avr 18.6
(-1.1) 		18.9
(-1.1) 		6
(-3) 		46.1
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 639
1 2 3 4 5 6 range
A 56.9
(-2.6)
A 		12.1
(-3)
A 		55.8
(-2.6)
A 		13.3
(-3)
A 		300.1
(-0.3)
P 		642.9
(3)
P 		631
B 21.6
(-2.8)
A 		41.1
(-2.6)
A 		3.9
(-3)
A 		10
(-2.9)
A 		335.5
(0.4)
P 		590.7
(3)
P 		587
C 4.7
(-3)
A 		28
(-2.7)
A 		5.4
(-3)
A 		25.6
(-2.7)
A 		327.6
(1)
P 		491.7
(3)
P 		487
avr 27.7
(-2.9) 		27.1
(-2.9) 		21.7
(-2.9) 		16.3
(-3) 		321.1
(0.3) 		575.1
(3) 		559
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.2
(-2)
A 		7.6
(3)
A 		1.1
(-3)
A 		2.2
(-2)
A 		7
B 10.5
(1.8)
A 		2.3
(-2.3)
A 		0.9
(-3)
A 		12.9
(3)
A 		12
C 5.6
(-1.2)
A 		3.6
(-2.9)
A 		3.5
(-3)
A 		10.6
(3)
A 		7
avr 6.1
(0.8) 		4.5
(-0.6) 		1.8
(-3) 		8.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 10.5
(-2.7)
A 		4.3
(-3)
A 		12.2
(-2.7)
A 		3.4
(-3)
A 		90.5
(0.4)
P 		156.5
(3)
P 		153
B 7.5
(-2.8)
A 		13.7
(-2.6)
A 		0.9
(-3)
A 		2.6
(-3)
A 		136.3
(0.7)
P 		220.3
(3)
P 		219
C 1.8
(-3)
A 		8.5
(-2.7)
A 		1.4
(-3)
A 		5.1
(-2.9)
A 		106
(0.8)
P 		164.6
(3)
P 		163
avr 6.6
(-2.9) 		8.8
(-2.8) 		4.8
(-3) 		3.7
(-3) 		110.9
(0.6) 		180.5
(3) 		177
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181008_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.800
Sequence Type Exemplar sequence
Representative Public ID C15C6.2B NCBI
Target Description C15C6.2B /REP_DB=WormBase Gene ID /WP=CE18503 /TR=Q9XVT3 /GB=CAB02728.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060679(11), NM_060680(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060679 NCBI Caenorhabditis elegans C15C6.2b (C15C6.2) mRNA, complete cds. 11/11 A 
NM_060680 NCBI Caenorhabditis elegans C15C6.2a (C15C6.2) mRNA, complete cds. 9/11 None
SNAP00000035688 ENSEMBL cdna:SNAP chromosome:CEL140:I:12212026:12213901:1 11/11 None
GENEFINDER00000035692 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12212026:12214075:1 11/11 None
C15C6.2b ENSEMBL cdna:known chromosome:CEL140:I:12211922:12213904:1 gene:C15C6.2 11/11 A 
C15C6.2a ENSEMBL cdna:known chromosome:CEL140:I:12212026:12213863:1 gene:C15C6.2 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12211956-12213832(+) 100.0 100.0
Public Domain and Genome References
Ensembl C15C6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02728 Hypothetical protein C15C6.2b [Caenorhabditis elegans] ref|NP_493080.1| C15C6.2b [Caenorhabditis elegans] 1.0E-140
blast CAB02728 Hypothetical protein C15C6.2b [Caenorhabditis elegans] ref|NP_493080.1| C15C6.2b [Caenorhabditis elegans] 1.0E-139
blast CAB02727 Hypothetical protein C15C6.2a [Caenorhabditis elegans] ref|NP_493081.1| C15C6.2a [Caenorhabditis elegans] 1.0E-104
blast CAB02728 Hypothetical protein C15C6.2b [Caenorhabditis elegans] ref|NP_493080.1| C15C6.2b [Caenorhabditis elegans] 6.0E-94
blast CAB02727 Hypothetical protein C15C6.2a [Caenorhabditis elegans] ref|NP_493081.1| C15C6.2a [Caenorhabditis elegans] 1.0E-93
Sequence
Target Sequence 
>C. ELEGANS:181008_AT
aagtcgacgaggtgaagcccactgccatcgagcaaataccacttccccatgtctccgtcc
ggtctcttcgccagaaactcgagaaggagctcgtcctgaagcctaaggagcaagtgctcg
ccgagcaacaacacaaagccaactgcgatgagccaagctttgtctctgaaatcttctgca
ccccaagagcagttttcagcgatgaaactgtagttctgctggagccaacgaatgccagag
agaggagagaatacgaggcgcaggcggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCGACGAGGTGAAGCCCACTGC 394 157 575 Antisense
CCCACTGCCATCGAGCAAATACCAC 328 257 592 Antisense
GCCTAAGGAGCAAGTGCTCGCCGAG 379 281 675 Antisense
GCCGAGCAACAACACAAAGCCAACT 404 283 694 Antisense
CAAAGCCAACTGCGATGAGCCAAGC 134 193 708 Antisense
GCGATGAGCCAAGCTTTGTCTCTGA 26 291 719 Antisense
TTTGTCTCTGAAATCTTCTGCACCC 453 667 733 Antisense
GCACCCCAAGAGCAGTTTTCAGCGA 132 313 752 Antisense
GAAACTGTAGTTCTGCTGGAGCCAA 485 357 778 Antisense
GGAGCCAACGAATGCCAGAGAGAGG 624 521 795 Antisense
GAGAGAATACGAGGCGCAGGCGGAC 78 393 819 Antisense
Sequence Source Affymetrix Proprietary Database