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[181007_at]

Description F53A9.7 /REP_DB=WormBase Gene ID /WP=CE02767 /TR=Q20692 /GB=AAC46562.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 80      6grp_total > 40      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 305
1 2 3 4 range
A 189.3
(-1.4)
P 		119.6
(-3)
P 		196.3
(-1.2)
P 		373.3
(3)
P 		254
B 198.4
(-1)
P 		336.1
(3)
P 		128.3
(-3)
P 		238.7
(0.2)
P 		208
C 213.5
(-1.6)
P 		182.9
(-2.2)
P 		146.2
(-3)
P 		424.8
(3)
P 		279
avr 200.4
(-1.6) 		212.9
(-1.2) 		156.9
(-3) 		345.6
(3) 		189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 261.5
(3)
P 		168.5
(-2)
P 		221.2
(0.8)
P 		173.3
(-1.8)
P 		150.4
(-3)
P 		174.6
(-1.7)
P 		111
B 178.1
(-0.9)
P 		242
(3)
P 		226.5
(2.1)
P 		218.9
(1.6)
P 		142.5
(-3)
P 		175.3
(-1)
P 		100
C 206.5
(0.1)
P 		235.6
(1)
P 		180.7
(-0.7)
P 		303.8
(3)
P 		103.5
(-3)
P 		213.2
(0.3)
P 		200
avr 215.4
(2) 		215.4
(2) 		209.5
(1.6) 		232
(3) 		132.1
(-3) 		187.7
(0.3) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 68.9
(3)
P 		26
(-3)
P 		51.3
(0.5)
P 		54.6
(1)
P 		43
B 63.3
(0.8)
P 		83
(3)
P 		29.7
(-3)
P 		50.9
(-0.6)
P 		53
C 70.7
(2.7)
P 		52.6
(-2.5)
P 		50.9
(-3)
P 		71.6
(3)
P 		21
avr 67.6
(3) 		53.9
(-0.5) 		44
(-3) 		59
(0.8) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 48.2
(-1)
P 		59.9
(3)
P 		48.2
(-1)
P 		44
(-2.5)
P 		45.4
(-2)
P 		42.5
(-3)
P 		17
B 62
(-1.4)
P 		80.5
(3)
P 		55
(-3)
P 		58
(-2.3)
P 		57.9
(-2.3)
P 		65.4
(-0.6)
P 		26
C 76.5
(3)
P 		71.9
(2.4)
P 		46
(-1.3)
P 		61.1
(0.9)
P 		33.5
(-3)
P 		71.4
(2.3)
P 		43
avr 62.2
(1) 		70.8
(3) 		49.7
(-2) 		54.4
(-0.9) 		45.6
(-3) 		59.8
(0.4) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181007_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16830
Sequence Type Exemplar sequence
Representative Public ID F53A9.7 NCBI
Target Description F53A9.7 /REP_DB=WormBase Gene ID /WP=CE02767 /TR=Q20692 /GB=AAC46562.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077075(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077075 NCBI Caenorhabditis elegans F53A9.7 (F53A9.7) mRNA, complete cds. 11/11 None
F53A9.7 ENSEMBL cdna:known chromosome:CEL140:X:8716491:8717079:-1 gene:F53A9.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001077 4/11 Cross Hyb Matching Probes None
GENEFINDER00000001082 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8716601-8717078(-) 92.87 100.0
Public Domain and Genome References
Gene Title
Ensembl F53A9.7
Entrez Gene 186146 Entrez gene
SwissProt Q20692 EMBL-EBI
WormBase CE02767 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46562 Hypothetical protein F53A9.7 [Caenorhabditis elegans] ref|NP_509476.1| F53A9.7 [Caenorhabditis elegans] 1.0E-37
Sequence
Target Sequence 
>C. ELEGANS:181007_AT
atgggggagggccaaataccgccagcacatgatagttccatctttatctcttgtgacgta
ctattgaaaaaaatttctataaatactcgaacgtggttaccatgctctatcagttgttca
gcttcacttctggaaaattcacctttttattttactttatttgtttgtgattatatatct
cactcatttcatttattgatcaatatattttcagaaataatgtcgtaccacggaaacgga
ggatacaacgctccatacggaggacacggaggatatgctccaccaccagtccatggagct
ccaggatacatgccaccaactgttgttcacactgacggaggacatcacggacacgttgac
acccatcaccatgaagagagtcaccatggagaacatcatggaggacaccatggagtacaa
cactacgagagtcaccacgaaagcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGGGAGGGCCAAATACCGCCAG 246 49 13 Antisense
ATACCGCCAGCACATGATAGTTCCA 538 23 28 Antisense
TAGTTCCATCTTTATCTCTTGTGAC 688 653 45 Antisense
AAATACTCGAACGTGGTTACCATGC 442 115 93 Antisense
GTTACCATGCTCTATCAGTTGTTCA 600 445 108 Antisense
CAGTTGTTCAGCTTCACTTCTGGAA 261 207 123 Antisense
GATTATATATCTCACTCATTTCATT 1 431 181 Antisense
CACCAACTGTTGTTCACACTGACGG 161 201 326 Antisense
GGACATCACGGACACGTTGACACCC 675 525 352 Antisense
GAGGACACCATGGAGTACAACACTA 699 403 413 Antisense
ACTACGAGAGTCACCACGAAAGCCA 347 101 434 Antisense
Sequence Source Affymetrix Proprietary Database